RNA id: XM_022672093.1


Basic Information

Item Value
RNA id XM_022672093.1
length 1439
RNA type mRNA
GC content 0.48
exon number 10
gene id pcgf3
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9276546 ~ 9348427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATGCGCAGCATGGCCTGGCGCTTCGGCCTGTATCGGAAGCGCTCGGCGAATTTCGCCTCTTTGTTTTACTGATAGTGGATTTAACTCGGATTCGAGCCCTGATATCCACCGGAGTGCTCCGCGGAGAAACAGGTGTGTGAGCAGTGGTCCAGAATGCGGAGTTAGTATCGGTCTCCATCTGCTAGAAGAAGCCTGGCTGCCTCATTCTCTGCAGTAAACACATGGCGGCAATAGGGAACCCAGAGATGCTCACAAGAAAGATTAAATTGTGGGACATCAACGCCCACATAACGTGTCGCCTGTGTGAGGGGTACCTAATCGACGCCACTACTGTAACCGAGTGCTTACACACATTCTGCAGGAGCTGTTTAGTGAAGTATCTGGAAGAGAACAACACGTGTCCCACATGTAGGATTGTCATTCACCAGAGCCACCCACTGCAGTATATCGGcCATGACAGAACAATGCAAGACATCGTCTACAAGTTGGTGCCAGGACTGCAGGAAGCGGAGTTGAGAAAGCAGAGAGATTTCTATCAGAAGTTGGGTATGGAGGTGCCTGGAGACATCAAAGGAGAGCTGTGCAACATGAAGCCCCACCTAGATACACAGCGCAACGgTGACGTAAAACCAGAGGATGGAGCCAATAAGGAAGGAGAGGAGAAGCCAGAAGAAGATAATGATTATCATCGCAGCGATGAACAAgTGAGTATCTGTCTGGAGTGTAACAGCAGTAAGCTGCGTGGACTGAAGCGTAAATGGATCCGGTGCTCAGCACAGGCCACAGTCCTCCACCTAAAGAAATTCATCGCCAAGAAGCTCAACCTGACATCCTTTAACGAGCTGGATATTTTATGCAATGAAGAAATCTTGGGCAAGGACCACACTTTAAAATTTGTTGTCGTGACGAGATGGAGATTTAAGAAATCCCCTCTACTCCTGCATTACAGACCTAAAATGGATTTGCTGTAGTTGGACAAAACTGGTTGTTTTTGGCCCAGTGGCCCAGGACTGTGCAACACAACGCTATTTATGCAGAGACTATCAATGCCCGCACCAAACAGACCCCTGTCCCAGGAGTCGAACCATACACGAGCCAGCAAACAACGAAAACCAGCTCAGTTACTGCTCCACACTGACGGCTTAGCCAAACAACCACAGgctttttaggtttttagtttattctttttttttttccttctttttctgttCGTCCTGGATATGTGaagactgagagacagagaaaaagagagagagagcatatatttatacttttgtacagaagagagagagacacacatgGACTCGAGACACTACTGGTGCtctgtttacacacacaacaaacgAATCAACTGGACGAGAGATGACCGAACAGTTTTTATACAGAGTGGTGGACGGCAGAACGGATGGACGGACGCCTGGGCGGGCGGGCGGGCGG

Function

GO: NA

KEGG:

id description
K11488 PCGF3; polycomb group RING finger protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97492 lncRNA upstream 48660 9227515 ~ 9227886 (+) True G72285
TU97469 lncRNA upstream 124580 9142362 ~ 9151966 (+) True G72263
TU97484 lncRNA upstream 185928 9089876 ~ 9090618 (+) True G72278
TU97464 lncRNA upstream 240520 8955355 ~ 9036026 (+) False LOC103030246
XR_002650234.1 lncRNA upstream 483370 8784572 ~ 8793176 (+) True LOC111193079
TU97515 lncRNA downstream 243880 9592307 ~ 9639931 (+) True G72305
TU97519 lncRNA downstream 249522 9597949 ~ 9651534 (+) False G72306
TU97521 lncRNA downstream 249522 9597949 ~ 9651534 (+) False G72306
TU97518 lncRNA downstream 300720 9649147 ~ 9651534 (+) True G72306
TU97761 lncRNA downstream 344242 9692669 ~ 9698998 (+) True G72488
XM_015608793.2 mRNA upstream 50987 9196453 ~ 9225559 (+) True LOC111188173
XM_015608812.2 mRNA upstream 82031 9187244 ~ 9194515 (+) True LOC107197946
XM_022672083.1 mRNA upstream 101647 9171322 ~ 9174899 (+) True LOC103034588
XM_022672084.1 mRNA upstream 113803 9158954 ~ 9162743 (+) True LOC111193086
XM_022672087.1 mRNA upstream 118148 9156733 ~ 9158398 (+) True LOC111193089
XM_007228037.3 mRNA downstream 442844 9791271 ~ 9799463 (+) True LOC103043406
XM_022672096.1 mRNA downstream 478860 9827287 ~ 9853057 (+) True tbc1d2
XM_022672099.1 mRNA downstream 561979 9910406 ~ 9957528 (+) True LOC103044029
XM_022672100.1 mRNA downstream 561979 9910406 ~ 9957528 (+) False LOC103044029
XM_022672102.1 mRNA downstream 561980 9910407 ~ 9957528 (+) False LOC103044029
TU97487 other upstream 127127 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 2391005 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2737752 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3238798 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3239672 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 730152 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3254925 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 3523057 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5300402 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 5543107 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile