RNA id: XM_022672099.1


Basic Information

Item Value
RNA id XM_022672099.1
length 8516
RNA type mRNA
GC content 0.48
exon number 48
gene id LOC103044029
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9910406 ~ 9957528 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATAAAGCCTTCGGGAAGCGAGCAGATGCTCTTTTTCAATCAGAGAAGCTGACGGAGTCTGATCCTAAACCGAGCTTGTACCGGGTTTAACACAGCGGAATACAGCAAATGAGCAGGAGGAGCAGATCTTCAGGTGTGTCCTTGTGAGAAGCTGGAGAGCGCAGCGTGAGGAGGACCTGAGTGAAGATGTCCATCTCCACTCAGCTGAGGCTGCTGCTGTGGAAGAATTTCACCTACAGAAGAAGACAAACGCTCCAGCTGCTGATTGAGATAGTGTGGCctctcttcatcttcttcatctTGATCGCAGTGAGATTGAACTACCCCCCATATGAGCAGCATGAATGTCACTTTCCCAACAAAGCCATGCCCTCAGCAGGCACCCTGCCATGGATCCAGGGCATTGTCTGCAACGCCAACAACCCATGCTTCCGCCACCCTACCCCTGGAGAATCCCCTGGCGTAGTCGGCAACTTCAACGATTCTATAATATCACGCCTTTTTTCTGATGCCAAGAAAATCCTACTGTACAGTCAGAATGACAAGAGTCTGGATGGGTTTAAGGAGCTAATCCATGCAGTGAAAGCTCTGCAGAACAACACGTCAGGTTTCAAGCTTAAAGATTTCCTCAATGACAACGAGACCCTGTCCACATTCCTCATACAGAACGCCTCCTTCTCCGAAAATTATGTTCAGGACATTCTGAAGGCAGATGTGAACTTGGAAAAGGTATTAACCAAAGGCTTTGGAGTACATTTGAGAGATATGTGCAACACAACACTCTTGGAGGACTTTGTAAACATCACAAACAAGAAGGTGGCAAAGCTGACTCAGGAAAGCATCTGCAGCTCCTCGAAGACCTGGCTAAACCAGGCTGAAAGACACTTCATGGCCAACCTGGACTTCTTCAAGCCTTTAAGGGATGCCAAAAAGATTTCTAAGTCAAGGTCTGATTCCAGGCCAGAAACCAGAGAGGCCCGTAAAGTTGCTAAAGCTGCAGACAACCTTCTGGAAAACCTGGGATCTTTGGCCGTGGAGCTGGCCAGCATGCGGAGTTGGAGCGACCTGCGAAATGAGATCCTCTTCCTGACCAGGAATGCAACTGGTTCCCCCAGCCAGATGTACCAAGCTGTGTCTAGAATAGTTTGTGGACATCCTGAAGGTGGCGGACTCAAAATCAAGTCCCTGAACTGGTACGAGGACAGCAACTACAAAGCTCTGTTCGGGAACTACAACAGCAGCGATGAGGAGCCTGTTTCAGTCTATGACAACACATCCACTCCCTTCTGTAACAACCTTATGAAAAACATGGAGACAAACCCAATCTCCCGCATGATCTGGAGAGCTCTGAAACCTCTGCTTATGGGGAAGATCCTGTACACCCCTCACACACCTGCCACCCACAAGATCATCAAAGAGGTCAACAGGACATTTCAGGAGTTGGGTGTCCTCCGAGATCTCGGGGGAATGTGGGAGGAGACTAGACCCAAAGCTTGGAATTTCATGGAGCACAGTGAGGAGATGGACCTTTTGAGGACTTTACTACAGAACAACGTCACAGCCGCCTTCTTCAGTGCCCAGCTGACTGGCACTCAGTGGAGTGTCCAGGATGTTATCAGCTTCCTGACCAAACAATCAGAGGACACACGTCCGCATGGGACAGCGTTCACGTGGAGAGATGTCTTCAATGAGACCGACCAGGCCATTATGAGCATATCCCGTTTCATGGAGTGTGTAAACCTGGATAAACTGGAGCCTGTGAGTACAGAGGAGAAGCTAATTAACGATTCTCTGGGTCTGCTGGACAACAGGAAGTTCTGGGCTGGAATTATTTTCCCTGACATTCAATCTAACAGCTCCGAACTTCCACCCCACGTCAACTATAAGATTCGGATGGACATCGACAATGTGGAGCGCACCAACAAGATCAAGGACGCGTACTGGGACCCAGGTCCTAGAGCTGACCCGTTTGAGGATCTTCGGTATGTTTGGGGCGGATTCTCTTACCTGCAGGACGTAATAGAGCAAAGCATAATCAGAGCAGTTACAGGAACCAAGGAGAAGACTGGAGTCTACATCCAGCAGATGCCTTACCCCTGCTATGTGGATGACATTTTCTTGCGTGTGATGAGTCGCTCCATGCCTCTCTTCATGACCCTCGCCTGGATGTACTCTGTGGCCATCATTATAAAAGGCGTGGTCTACGAGAAAGAAGCCCGCCTCAAGGAAACCATGAGGATTATGGGATTGGACAACGGGATCCTGTGGTTCAGCTGGTTTATCAGCAGCCTCATCCCTCTACTCATGAgtgctggactgctggtgcttctGCTCAagATGGGCAACCTGCTCCCCTACAGTGACCCTGGGGTGGTCTTCCTCTTCTTGGGCTCCTTTGCTGTGGTCACCATCATGCAGTGTTTTCTCATCAGCACAGTGTTCGCTCGGGCCAACCTGGCTGCTGCCTGTGGAGGAATCATCTACTTTACGCTCTACCTGCCCTATGTGCTGTGCGTGGCCTGGCAGGATTACATTGGCCTCCCTGCCAAAGTCATTGCTAGCCTGCTGTCCCCAGTGGCGTTTGGGTTTGGGTGTGAGTACTTTGCTCTGTTTGAGGAGCAGGGAGTGGGCATCCAGTGGAAAAACCTCTTCTCCAGCCCAATGGAGAAAGATGACTACAGCCTCACTACCTCCATTATCATAATGTACGTTGACGCCTTCATCTATGGTGTAATGACATGGTACATAGAGGCTGTGTTCCCTGGTCAGTATGGCATCCCCAGACCATGGTACTTCCCATTTACCAAGTCTTACTGGTTCGGAGAAGGAGACCAAAGGCCGACACCAATTCTGAAAGGAAGAAAAGCAAATTCAGGAGcTGTGTGCATTGAGGAAGAGCCTACTCACCTTGATATGGGAGTATACATCGAGAACCTAGTTAAGGTTTACCGCCATGGCAAAAAGCTGGCTGTGGATGACTTAACGCTGGGATTCTACGAGGGCCAGATTACCTCCTTCCTGGGTCACAATGGAGCAGGGAAAACTACCACCATgTCCATCCTGACTGGTCTGTTTCCACCAACCTCCGGCACAGCATACATCATGGGAAAAGACATCCGCTCGGAGCTGAGTGCCATCCGGCAGAGTTTGGGAGTGTGCCCTCAGCACAATGTCCTCTTCAGCATGCTGACAGTGGAGGAGCATGTGTGGTTCTATGCACGTCTCAAAGGACTTTCTGAAGAAGAGGTGAAGGCTGAGATCGACCAGATTTTGTATGATACTGGACTTCCACATAAACGCAAGTCCAGGACATGTGAGCTCTCTGGTGGCATGCAGAGGAAGCTCTCAGTGGCTCTTGCTTTTGTCGGAGGATCAAAGGTTGTCATTCTGGATGAACCGACTGCTGGTGTGGACCCATACGCTCGCAGAGGCATCTGGGACCTCCTGCTGAAGTACCGCACAGGTCGCACTATCATTCTTTCCACTCATCACATGGATGAAGCAGACATCTTGGGTGACCGCATTGCCATCATCTCTCATGGAAAGCTGTGCTGTGTGGGCTCCTCTCTCTTCCTGAAGACCCATCTGGGAACTGGATACTACCTCACTTTGGTTAAGAAAGAACCGGAAGCTTCTCTCAGCTCCTGCaggaactccagcagcactgtgtCTTACGTCAAGAAGGATGATGAAGCCTCTGAGAGCAGTTCAGATGCTGGACTGGGCAGCGATCATGAGAGTGATGCTGCTACAGCTATTGGCTCTTCATGGACTGACTCACCTATTGTTCCTGCAGACATCTCTCTAATCTCAGGTCTGATCATTAAGCATGTCCCCAACGCACGCATGGTGGAGGACTTGGGCCATGAAATCACCTACATCCTCCCCTATGAATCCGCCAAAGACGGAGCCTTTGTTGAACTCTTTCACGATATGGATGATCACCTTGCTGATTTAGGCATCTCTAGCTATGGAGTTTCTGACACCACTCTTGAAGAGATATTCCTAAAAGTGGCAGAGGACAGTGGGGTTGATACTGAAATATTGTCAGATGGTACCTTCCCTATACGCCGGCGCAGACGACATGCTTTCGGAGCTGATCACCAGAGCTGCCTTAAACCATTGACTGAAGATGACCGATATGATGGCAATGAATCAGAAGTTGATCCAGAGTCCAGAGAGACAGATTACTTGAGTGGTTCGGATGGTAAAGGCTCATACCAGATTCAGGGCTGGAGTCTGAAGAGACAGCAGTTCCTGGCCTTGCTGTGGAAGAGGTTCCTGTATGCCCGTCGTTCTAGGAAAGGCTTTTTTGCACAGatTGTTCTTCCTGCTGTATTTGTGTGCATTGCTCTGGTCTTCAGTCTTATTGTTCCCCCATTCGGAAAATACCCCAGCCTTGCCCTTCAGCCTTGGATGTATGAGGATCAGGTCACTTTTATTAGCGATGATGCACCTGAAGATGCCAGCACACAAAGATTACTTGCTGCTCTAATGGAAGGCCCTGGCTTTGGAACACGCTGCATGGAAGGAGAGCCAATTCCAGATGCTCCGTGCACTATAGGCGATGATGACTGGTCCATACCTGAGGTTCCAGAAAGTGTGCTGGAAGTGTTAATGTCGCAAAACTGGACCATGGACAATCCCTCGCCAGCGTGCGAGTGCAGCAGTGACGGCAAGAAAAAGATGCTCCCAGAATGCCCTGCCAGTGCTGGAGGACTGCCACCTCCACAGATTAAGATCAGCGAGAGGGACACCCTCCAAAATCTGACTGGAAGAAACATCTCTGATTACCTTGTGAAGACATACGCTCAGATCATTGGCAAAAGtttgaagAACAAGGTCTGGGTGAACGAGTTCAGATATGGAGGTTTCTCACTGGGTGCTAGAAGTACTCAGGTGCTTCCACCTGCTGAGGAGATTGATGATGCCATTGCTCGAGTGAGGGTAATCTTTAACTTAGAAAAGAACTCTGGGACAGCAGCTGATCGCTTCTTAAAGAGTCTTTCTGCTTTCATCAATGGCCTGGACACCAAAAATAATGTGAAGATCTGGTTCAATAACAAGGGCTGGCATAGTATCGGAGCTTTCCTCAATGTGATGAACAATGGTATCCTACGTGCCAATCTGCCCCCGGAAAAGGATCCAAGTAAATATGGCATAACAGCCTTCAACCACCCTTTGAACCTTACCAAAGAGCAGCTCTCCCAGGTTGCACTGGTCACCACTTCAGTGGACGTGCTGGTGTCCATCTGtgtgatttttgccatgtccttcGTTCCTGCCAGCTTCGTAGTCTTCCTCATCCAAGAGCGTGTGAACAAAGCCAAGCACATGCAGTTCATCAGTGGTGTACAGCCGTTCCTGTACTGGCTGGCCAACTTCATCTGGGATATGTGCAATTATGTTGTGCCAGCAACCCTGGTCATCCTCATCTTTGTGTGCTTCCAACAAAAAGCCTATGTCTCTGCAACCAACCTTCCTGTGCTGGCCCTGTTGTTGCTTTTGTATGGGTGGTCCATCACTCCTCTGATGTACCCAGCCTCGTTCCTATTTGAAATCCCCAGCACTGCTTACGTCGTCctcaccagtgtcaacatcctGATCGGCATAAATGGGAGCGTATCCACTTTTGTATTGGAGCTGTTTGGTAACAATGAGATTGGTGGCATCAATGATATTTTGAAAAATGTGCTCCTGATCTTCCCTCACTTCTGTCTGGGCCGAGGTCTGATCGATATGGTGAAGAACCAGGCCATGGCTGATGCTCTGGAGCGATTCGGTGAGAACCGCTTCCGTTCACCTTTTGAGTGGGACATGGTGGGTAAGAACCTCTTCGCCATGGCAGTAGAGGGAGTGGTCTTCTTCATCATCACTGTCCTCATCCAGTACCGCTTCTTCTTTAAACCCAAGTCTCTGAGTGCAAAGTTGAGCCCCATtggagaggaggatgaggatgTGGCCAGGGAGAGACAGAGGATTGTTAGTGGAGCGGGACAAGGAGATATCCTGGAACTCAGAGAGCTCACCAAGGTGTATAAGAGGAAACAGAAGCCTGCTGTTGATCGACTTTGCGTGGGCATTCCTCCAGGCGAGTGCTTTGGTCTGCTTGGTGTGAATGGAGCTGGAAAGACGACTACTTTCAAGATGCTGACAGGAGATACAGTAGTCACTAGTGGAGAAGCTTTCCTAGCTAGAAAGAGTATACTCAGGGAAATAGATCAGGTTCATCAGAACATGGGCTACTGCCCTCAGTTTGATGCCATTAATGACCTGCTGACGGGCAGAGAGCATCTGGAGTTCTACGCCATCCTGCGAGGGGTTCCTGAGAGAGAAGTGTGTGAGGTGGCTGAATGGGGCATTCGCAAACTGGGCCTGGTAAAATACTCTGACAAAGCAGCCGGAAGCTACAGTGGGGGCAACATGCGCAAACTCTCCACTGCCATGGCACTCATAGGGGGCCCACCAGTGGTGTTTCTGGACGAGCCCACCACTGGCATGGACCCCAAGGCACGCCGTGCTCTGTGGAACTGTATTCACAGTGTCATCAAAGAGGGTCGCTCTGTGGTGCTCACTTCACACAGCATGGAGGAGTGTGAAGCCCTGTGCACGAGGATGGCCATTATGGTGAATGGCAGATTCCGCTGTCTGGGCAGCGTCCAACACCTGAAAAACAGATTTGGCGATGGATACACCATCATTCTAAGAGTAGCAGGCCCAGACCCAGACCTGCAGCCTGTGATGAAGTTTATCGAGAGTGAGCTGCCCGGCAGCACACTGAAGGAGAAGCACAGGAACATGCTGCAGTATCAGCTGCCCTCATCCGTCTCCTCCCTCGCTCACATCTTCAGCATCCTTGCCAAACACAAAGACTTCCTCAGAATAGAGGACTACTCCGTCTCCCAAACCACACTGGACCAGGTTTTTGTTAACTTTGCCAAAGACCAAAGTGACGATCACTCTGATCACTCCATCCGGCGCAAAGAGGCAGCAGCGGTGGACATTCCTCTGCTCAGCCTCCCAGCTCCACTAAAGACAGAGGACAACCCCAAGGAGAGCTTCGTTTGACCAAAAGACATTCCTTACACTAGTAGTGAACTGGAGCCAGTGAAATTCACCAATTTCACATTGCCGTTCTTGTCTTTGTGCTGCAGTCTGCTAATTAATTTGCTCAGCCGGCCAGATAAGGCCTGCAGGAGTTCACTGGTGCAGACACAGTAGCTGAGAAACACAATGCAAGTCAATGCAAAAAAGATAAAGAGTCCACTCGGGATGTGCTGTGGAGCCTGGATTGCCATGCTAATCCCAGATGAGAGTGTCAGACTGAAACTTGAACAACTGCCATAATTTCTTGTTCTCGTCGGCCTGCGGAAGAAAGAGTGTGTGCAGTTTTTGTATTTGTAGTTGACGGATCTGTCGAGTATGTTGTGTAATTTTTGATTGGTGACTTGCGTGTGACAGGAAAATTCAGGGtcagtttctttttatttgtactAGAAATGACTTAATGAAGAATCACAATCGTTTTGTTTTTGCGTCACCAAGGGCTACACTGCAGAAAATTTACTGTTCAGTTGATTCAGTTTTAATATGTGCCTTTATTTATGAACAAATCACTGTTTTacaattgttttgtttattttttaagtccAGTTGGGCATTATTtcgtaaaatattttttgcaaacAGTGCCTGACTTTAAACACTGCGATCTGAGAGAAGCGGGAGAAGTGTTCATTGTTGAGTTAGAAAAGTACtgtaaagagaaaataactggtttagtgttttatttaagaCTGGAGATAAATTTCTCCCAGTCACAACACGTAACATATACCTCAGCAGATACAGGAGCCCTGACATTTCAGCATTTTGAAGGACATTCGATTGGAAGAAGAATCTCCTTACGTAAGAGCGTGACTTCAGGTGTAACGGTGTTCATGGAAGGGTTGTGGAAACCAATAATCCAGCAGGCTGTATGACCTCAAGTAAACCTTCAAAGCCAAGCTAATCCTTTGTAGTACACGGTTAAGTACAGACACAGTGAGATGTCCACAGAGTCAGGAGCCTAATCTATCTGGTGTGTCTTAAAGACAATCAGTGTTATAAATCCAGTGTGTTGTGCTTTAATCAGCAAAGCAcagccattttttttctaaactttaCTACGCCATGATCCGTCAGTATTCTGGAGCAGAGCTTTTCACTGGTCTCAGAGGGAGGACGCCTGTGGGGTCGGTCCTCTCAGTCCTAGCACTTTACTGGCTGTATTAATTGGGAAGTTGTTTATCCTTTTGCACTGGATTTTCCacagtttaaagaaaaaaaacattccacattgtttattttgttttgttctaccttttcttttttcagtggATTCAATTGAAATACTTGGACCTTAGAGATATGCCTTATTTAATACCTGTTTACATTTCAGATGAATGGATGTGGAACATCTGTTACTCACCCAGTACAtacttacacaataaaatatgaCAACTTTACAacacaaa

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05641 ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97793 lncRNA upstream 136807 9773199 ~ 9773599 (+) True G72514
TU97782 lncRNA upstream 188524 9720971 ~ 9721882 (+) True G72503
TU97779 lncRNA upstream 192491 9717673 ~ 9717915 (+) True G72500
TU97773 lncRNA upstream 200192 9708437 ~ 9710214 (+) True G72496
TU97763 lncRNA upstream 211408 9692669 ~ 9698998 (+) False G72488
TU97903 lncRNA downstream 11039 9968567 ~ 9970042 (+) False LOC103043718
TU97912 lncRNA downstream 20447 9977975 ~ 9978422 (+) True G72606
TU97918 lncRNA downstream 70955 10028483 ~ 10028846 (+) True G72612
TU97923 lncRNA downstream 99955 10057483 ~ 10057818 (+) True G72615
TU97925 lncRNA downstream 101157 10058685 ~ 10058886 (+) True G72617
XM_022672096.1 mRNA upstream 57349 9827287 ~ 9853057 (+) True tbc1d2
XM_007228037.3 mRNA upstream 110943 9791271 ~ 9799463 (+) True LOC103043406
XM_022672093.1 mRNA upstream 561979 9276546 ~ 9348427 (+) True pcgf3
XM_015608793.2 mRNA upstream 684847 9196453 ~ 9225559 (+) True LOC111188173
XM_015608812.2 mRNA upstream 715891 9187244 ~ 9194515 (+) True LOC107197946
XM_007228038.3 mRNA downstream 10978 9968506 ~ 9970042 (+) True LOC103043718
XM_007228041.3 mRNA downstream 16696 9974224 ~ 9977824 (+) True thg1l
XM_015600832.2 mRNA downstream 18847 9976375 ~ 9977824 (+) False thg1l
XM_007228043.3 mRNA downstream 107888 10065416 ~ 10073101 (+) True irf7
XM_007228044.3 mRNA downstream 107889 10065417 ~ 10073101 (+) False irf7
TU97487 other upstream 760987 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 3024865 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 3371612 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 3872658 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 3873532 6036802 ~ 6036874 (+) True trnaa-agc_14
TU97933 other downstream 121051 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 2645824 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 2913956 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 4691301 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 4934006 14891534 ~ 14921003 (+) False rpgrip1l

Expression Profile