RNA id: XM_022672116.1


Basic Information

Item Value
RNA id XM_022672116.1
length 4161
RNA type mRNA
GC content 0.50
exon number 22
gene id igsf22
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 10975721 ~ 11000591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCTGTCATGTCCACTGAGGTGATCCAGTCCAGTGGGGGCGGTATGGGGCAGCGCTCTGAGCTACACATGTCTTCCAACTCgttctccacctccacctcctcctcaagCTCCTACTCCATCAGCTCCACACGTCTGAGAAAGGTCTCTCAAACCTCCAGGCTGCTCGAggAGCAGTCAGGAGTGCAGCGTAAGATCTCAGGTGTGATGGAGTCATTCAGTCAGGTGCAAAAGAGCTCTGAGATCCCTGCAGGAGAGAGCATTCCAGACTTCGAGGACAGGCCTTGCTCTGTTACAGCTCAAGAAGGGAACAAAGCTGCGTTTAAAGCAAAGGCATCCGGCAACCCCAAACCAACTGTAACCTGGACCAGAGAGAGCGGCAAACCGATGACAGAGGGTGCCAGGACCTTCTATGATGACATCAATAAGCAGTATGTGTTAAAGatTAAAAACCTGACCATGGAGGATGCTGATGTGTACAAGTGCATTGCATCTAATTGCCATGGGGATGCTATATACTCTGTCTCACTTGTTGTGACTGAAAATCCAGCACTGGactttaagaaaaagttgaagaAAAGGAGTgtggagaagaaggagaagaagccTCCCACCGAGGAGGAGATGCTGAAGATCCTGGCCGGGGCTGAGAAGAAAGACTACGAGCGCATCTGTGCAGAGTATGGCTTCACTGATTTCAGAGGAATCCTCAAGAAACTCAAAGAGATGAAGAAGAAAGTGGATGTGGAAATGGTGCGAGTTTTGAAACCCTTGGAGAATGTAACAGCGAAGGAGGACTCTAATGTAGTTTTTGACACTATTCTGGAGCTGAAAGATCCGAATATCAGGATGCTGTGGTTTCAGGGCGAGGAGCTGCTGCGGATTCAGTACTCTCTCGGGAAGTATGAAGTTAAACAGCTGGGTACTAAGCACATGCTGTGTATCTCCAGCGTGTGTCTGGCAGACTCTGGCACATACTCTCTAAAAGTTGGAGACAAGATCCTGTCGGCCAAGCTGACTGTCATAGAAGAGCCTTTGAAGTTCGCGACAGATCTGAAGCCCCTGCGAGTGACGGAGAGACAGACCGCTGTGTTTGAGGTGCATCTCTCCAAGAGGGCTGACACCCCTCCGGTGTGGAAGTTTAAAGGGAAGGAGCTAAAGCGAGATGAGAAGttcgatgtgtgtgtgtctgaggaCGGCCTCACTTACACTTTAAAGATCAAGGACGTGCGTCCCAGCGACACTGGGGACTTTACTATCAGCATCGGAGACTTGACCACTACAGCCCAGCTCTTCATTGAACGGATCCCAATCAAGTTTGTGAGTCATCTGAAGAACGTACGAGTGAAGGAGAAAGGCAAGGCCAGGCTGGAGGCAGAGATGAGCTCCAAAGACGTTCAGGTGAGGTGGCTGAAGGACGGGAAAGACATCACTAATAACCCACGCTACATCTTCATGAGGGAAGGCAAGAGGGCTGAGCTCATCATGGAAGACTGTGAACTGGAAGACAGAGGAGAATATTCCATCGTCTGCACTCAAGATAATGACAGCAATAAATACGTCAGCTCCTCCAACCTCACTGTGGAAGagCGCTTTGCCACAGTGAAGAGCAGCATGTCAGATGTTCAGTGTCCCTCAGGATCCCCCGCAGAGCTCTGTGTGGTTCTGGATGATGAGAAAGTAGATGGTGTCTGGCTGAAAGATGGTAAAGAGATCACGGATCTGAGAGGGGTCCAGGTGGTGAAGCAGGGTGCTGTTCATAAACTGCTGATCAGAAACGTGGGAGATGAACACGAGGGCCAATACACCTTCAGAGCGAAAGGAGCGGAGAGTGAGGCCGTGCTGAATATAGCCAATCCCCCTGTTATTGATCCCGCTCTGCTGGAGATGCTATCCAGCCAGCCGGTGACTGTGAAAGCTGGAGAGATGGCCACGATTAAGATCCCTTTCAAGGGCAAACCTGCACCAAAGGTAACTTGGTACAGAGACGGGCTGGAGCTGGTCGAGGACAGACGGGCAGTGGTGCAGCGGGATCGAGATTCCAGCACATTAGTGATTCATAAATGTGTGAGAGAGGACAGCGGAACTGTCATGCTCAGACTGAAAAGTGACTGTGGATCAGCCAGTGCCACTGTGCAGCTGAATGTGATTGACCGTCCTAAACCACCACAGGGTAAAGTGGATTTTCTGGAATGTAGTGGCAAGTGCATTACAATGAAGTGGAAAGCACCACGGGACAACGGGGGCAAAAAGGTGACCAGTTTCGTCATTGAGAGACGCATGACTGGAAAGAAGTCATGGATCAAGGTTGGAGAGGTGGATGGAGACATCACCACCTTCTGTAATGACACGGTGGAGGAGGGGAAGCCGTACCAGTACCGCATTAGAGCAGTGAACTCACAGGGTCTGAGTGATCCTTTGGAGACCGAGCAGGTCTATGCTGGAGAACCTATTGAACCTCCTAGTTTGGTCCCTCAGCCCCAGATCAGTGATGTAACTAAAGATTCAGCCACAGTCACATGGACTAATCCGGCCCAGGACGGTGGTGCTCCTGTTCTGGGTTACATAGTGGAACGCAGAAAGAAAGGAAGCAGTATGTGGGTGTCCATCAGCAAGGAACTAATCCAAGACACAAAGTGTGTGGTAGATGGCTTAGTGGAGGATATGGAGTATGAGTTCAGAGTGACTGCTGTCAACAGAGCTGGAGAGGGGACACCCAGTGCCTCATCCAACACAGTGCTGGCCAAGGATCCCACACGAGCTCCTGGTCTGGTTGGGAAATTTCATGTAATAGACTCCTCTAACACCTCCATATCTCTGGCCTGGTGTTCTCCTGAGCTGGGAGACAACCCAACCGGATATATCCTGGAGATGCGCCCTGAAGATGGGAAGGAATGGGCCAAATACACAAAGATTCCCATCACTGGTACCTCCTACAATGTTGGTGGCCTGCAGGAGCGGATGAAGTACTATTTCCGTATCAGAGCTGTCAATCAGGGGGGCATTGGAGAACCAATAGAGCTGGAGCATGGTGTTCTTGCTCTGCCACCACCagAACCCCCAAAGTTTAATCTCCAGGGCAAGGTGAAACATCAGATTTTGGTGCGAGCTGGATGCACACTGTGTATCCCTGTGTCCTTCAGTGGCTCTCCTCCTCCAGAGGTCACCTGGCTGAAAGATGGTGTTCCAACCAGAGGCCAGGAGGTCATTTCTAAGGGGAAGAACGATTCGCAGTTCATGATTACCTCATGTCAGCGCTCTGATTCTGGAGTGTACCGTGTTATCCTCAGCAATGACTGCGGGGAGGTTCACTACGACATCAGCGTCCGTGTCACTGatgctccTCGTTCTCCTAAGAACTTGCGTCTGGTAGAGGAGGTCCAGGGTACAGTAACTCTGCATTGGGACCACACTCCGGACCTCACTGAAGATGAGCACACTCATTATATCATCCTTAAGAGAGATACCAGTACAACCACCTGGTTTACGGCTGCTGAGCACGTCTTCAGCAGCAAGTACACCGTCACTGGCCTGTTTCCTGGCCGCAAGTACTACTTCCGAGTCATCGCACGCAATCTCATTGGGGACAGTGATCCTCTGGATGCAAAGGAGCCTTTCAGCATCGAAAAGGAGCATGAAAACCTCATCTTGCAGATGAAGCCCTTCACCCATAAGCATCATGAGGTCAAGCCTGGGATCCTCTTGCCCCTGAAGAACCATGCTGTTTGCTCTGGCAATGACTGCACCATGAGCTGCGCCTTCTTTGGCTTCCCCGTCCCGCAGGTCTCCTGGTTTAAGGAGGATGTGAGTATTTTAGACAGCCCTCGCTACTGGCAGAGCAGCACTGATGGAGTCTGCACCCTCACCATCCCCACCTGCACAGTTAAGGACAGCGGAGAATACACCTTGCTGGTGGAGAACAAGCTGGGGAAGGCCAAGTGCAAGTGCAGCCTTGTGGTCTTCGATAAGGATGATAACAGACTGCTGGAGCACCTGACTCAGGAATCTTGGAAAGAAAAGCTCATCATCTAAGGGAAGCACAATCCAAAGCACCTGTCTGGAATTATTAGCTGAatgcataaaaagtaaaatgcacattttatcAAATCTTTCTCAGTGGGTTGTTTAAGATgcatctgatttaaaaaactaaaaaactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98125 lncRNA upstream 173949 10799546 ~ 10801772 (+) True G72753
TU98124 lncRNA upstream 176876 10797992 ~ 10798845 (+) True G72752
TU98085 lncRNA upstream 348757 10571212 ~ 10626964 (+) False LOC103022150
TU98086 lncRNA upstream 348757 10571295 ~ 10626964 (+) False LOC103022150
XR_002650238.1 lncRNA upstream 876576 10097259 ~ 10099145 (+) True LOC111193092
TU98148 lncRNA downstream 7958 11008549 ~ 11015607 (+) True G72766
TU98149 lncRNA downstream 8225 11008816 ~ 11015607 (+) False G72766
TU98268 lncRNA downstream 184075 11184666 ~ 11184981 (+) True G72871
TU98272 lncRNA downstream 222183 11222774 ~ 11223004 (+) True G72875
TU98277 lncRNA downstream 224203 11224794 ~ 11226186 (+) True G72876
XM_022671910.1 mRNA upstream 348758 10272919 ~ 10626963 (+) True LOC103022150
XM_007228053.3 mRNA upstream 753894 10212563 ~ 10221827 (+) True tsg101
XM_007228054.3 mRNA upstream 763225 10207709 ~ 10212496 (+) True LOC103047796
XM_007228055.3 mRNA upstream 769599 10185737 ~ 10206122 (+) True hras
XM_007228043.3 mRNA upstream 902620 10065416 ~ 10073101 (+) True irf7
XM_022672118.1 mRNA downstream 28895 11029486 ~ 11034828 (+) False spty2d1
XM_007228061.3 mRNA downstream 28896 11029487 ~ 11034828 (+) True spty2d1
XM_007228060.3 mRNA downstream 28896 11029487 ~ 11034828 (+) False spty2d1
XM_022672117.1 mRNA downstream 28896 11029487 ~ 11034828 (+) False spty2d1
XM_007228059.3 mRNA downstream 36909 11037500 ~ 11048398 (+) True LOC103022764
TU97933 other upstream 893581 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 1826302 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 4090180 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 4436927 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 4937973 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 1602761 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 1870893 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 3648238 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 3890943 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 5286085 16286676 ~ 16288329 (+) True G74169

Expression Profile