RNA id: XM_022672134.1


Basic Information

Item Value
RNA id XM_022672134.1
length 1670
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC103038976
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11925987 ~ 11938380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagTAGTAGTTAGTAGGAGGAAGTTATACATGCGCAGCTCTGGCTGTGTTTTTCCTGCTGCAGCGCTCCATTCGCTCACACGCACCGGATGAACTTGACAGTTTGAACGGGAAACGATTTCACGCAGTTAAATCGGTGAAATCCCCCCGCGGAAGAACTCCACCGCTCCTGTAAACACCGCACACACTCCGCTGTACTCGCCGATACCGCCACTCTCCGCGCGCGAGGGAATCAAGAGAGCGCGAGCGGCAGGTCGGCGGTGCGGTGTATCTGAAGAACAGCGCGGGGTTCAGCGGTGCGGGACTGTTCCGTTAACTGCAGCTCAGACATGTCGGAACCGGGAGGCAAGCGGCTGAAAAGCAGCGTCCCCGTCTGTAGAGCTCACCGCGGTTCTGCCGCGAGCAGAGCCCGGCACAACCTGCCGCCTGCGGTGGAGGAAGCGCTGTGTGGAGTCTCCAGCTTGCTCATGGAGTTATCTTACCGTCTCCACGCGCTGGCCAAGATTTTTGAGCAAGATGACCTGGCTTTGCCACGTGTGGCTGCATATTTCTATCTGGAGTCCACAAGAGAGCAGGAGCAGGCGGAAGCCATGCTACACTACCTGTCCGAGCGTGGAGGACAATACTGCAGCAAAGATATCCAGAGACCAGGGACAGAGCAGGTGTGTGCGCTGCTCCCTGCCCTGGAACTCCTGCTGGGCCAGTGGAAGGAGGAGATGGCCATCATGGTGGAGCTGTCTCAGCTAGCACGTGAACATGGAGACCCCCACTCTGCCAGTGTCCTCAAGAGCCACTTCCTCCAGCCTCTCGCACCAAAGATCAAGCTGCTAGGTGACCTCTTGACCAATGCTCGAAGACTGGGCTGCACcagtgatggtgctggaggatATGGAGAGTACCTCATTGACCAGCTCTATGAGGAGCTGGCCAGTGCCTAAATGTCCTGTAAAGCCCCTTGTTGATGCATTAATGGCCTGACTAGCAGTTATTTCCTATCAATACTTTCTGCACTGTTAGATCTCGTGCTCAGCCTGCATGGAGTGTGTTCTGTTTGTGGCATGAAAGAGATGATTTGTGGGTTTCTTGAATGGCGTGTTCTTGAAGCTTGGTATTACCTTTCCCCACAGCTGAAAAGTACTGAGCAAGTGGAAAATAATGTGAATTTCCCATATTGTCAAAATAAGTGCTAAAAACATGGGAgagattattaaaaatgaatgactaAGAGAAATTTTGACAAGTTTGATATGTTTTTTAGTGACTATGaatgtgtttttgtaaaaacaaaaagcctGTAGAGTGGAACAACAACTTGCTGTTTTACATTAAGAAGTGccctatatgaaaaaaaattatgcagtATTTTATAGACAGAATTTGattcattgttatattttttgaCTGACACTGATTAAATGTTTTGGTCTGGATTGTGTATTGGAGGTTTAGATTTTTAATCTCACACTTCACCTATTTttttagaagtatttttaatcatttctgTTGCTTTTAAAGCGTGTTTTGTGATGGGTTCTGCGtgtttgtattgtgtttgtatgtgtggaAGACAAGAGTTTCCTTCTTTGCACTGTTACTTTTctttgtgttcatgtgtgtgttttatgtaggATTTAAGCCATAAACCAATAAAATCTATTGAAACTGTTAAA

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98379 lncRNA upstream 107749 11812999 ~ 11818238 (+) True G72946
TU98332 lncRNA upstream 246165 11610470 ~ 11679822 (+) True G72905
TU98320 lncRNA upstream 300491 11567577 ~ 11625496 (+) True G72893
TU98287 lncRNA upstream 403326 11521012 ~ 11522661 (+) True G72882
TU98277 lncRNA upstream 699801 11224794 ~ 11226186 (+) True G72876
TU98442 lncRNA downstream 5597 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA downstream 5597 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA downstream 5597 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA downstream 5597 11943977 ~ 11951765 (+) False G72993
TU98456 lncRNA downstream 39828 11978208 ~ 11978882 (+) True G73001
XM_007228089.3 mRNA upstream 192792 11665815 ~ 11733195 (+) True LOC103029705
XM_007228088.3 mRNA upstream 192792 11694558 ~ 11733195 (+) False LOC103029705
XM_007228087.3 mRNA upstream 192792 11697801 ~ 11733195 (+) False LOC103029705
XM_007228086.3 mRNA upstream 192792 11718811 ~ 11733195 (+) False LOC103029705
XM_007228082.3 mRNA upstream 291394 11563332 ~ 11634593 (+) True LOC103028645
XM_007228102.3 mRNA downstream 1144 11939524 ~ 11941817 (+) True myod1
XM_007228103.3 mRNA downstream 1144 11939524 ~ 11941817 (+) False myod1
XM_015600993.2 mRNA downstream 17244 11955624 ~ 11963784 (+) True LOC103034044
XM_022672140.1 mRNA downstream 426985 12365365 ~ 12417357 (+) True znf469
XM_022672142.1 mRNA downstream 520165 12458545 ~ 12485409 (+) False LOC103039191
TU97933 other upstream 1843847 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2776568 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5040446 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5387193 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5888239 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 664972 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 933104 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2710449 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2953154 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4348296 16286676 ~ 16288329 (+) True G74169

Expression Profile