RNA id: XM_022672135.1


Basic Information

Item Value
RNA id XM_022672135.1
length 3068
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC103031193
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11957570 ~ 11996201 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTCTTTCAGAGaggagtgtgtgctgtgtgggTTTGGCTTGATATTTTCAGCAGGCagagcagaggagaggacctGAGAGGAAGTGGCTCAGCACTCTTAGGAAGagtgatagtgtgtgtatgtgtggagagcagcacagcagatCCAGACACAAAGGAATACAAAGCTTTTCTCAACACAAAGAACTGCCCTGTCAGCTCCACCAGACCAGGAGAGAGAAGGACAGTGCTGTTGGACAGAAGGGAAACAGTGCTGCAGTCCAGAAACAGAGGATAGAGACATGTCAAGTGCAATCCTGAGACGAAACTCGAGCAAGCAGGGCTTGCAGAACCTCCTGAGAGTGACAGCCCAGCGCAGTATCGAAGATGCAGAGGAGATCGAGAGGGAGCGGCGGCGCAGGGCTCGAGAGTCTCTCCGGAAGGAACGAAGCCTCACTGGATCTTCTGGGTCCCCTCAGGACGGCTCGGGACCAACAGAGGAGTGCCTTTATCACAGCGGTCTGAAGCCCAGCAGCCCTGGAGGTCTGGAGGAAGACGAAGGCTTCAGTGACTGGACCCAGAGACTAGAGCGAGACAGACGAGCCAGGCAGGAGGAGAACGGCCCCAGAGAGGAGGACCTGGAGGTGGAAAGAACCATGAACGGAGCAACAAAAAGAGAAGACAAGATCAGCTCCAGCGTACTGACTCGACCACTTAAGGCCCAATACCAagtggaggaagaggaggagtacCAGCCCGTGAAGAAGAGCAGTGTGAAGCGGATGCAGtttggagagagacagagcagctTCAAGGACAAAGAGGCAGAAGAATGGAAGGAAGAGGTGACGAGAATAAACAAGAGACAAGAGGAAGATCCAAGACCACACGCTGAGGAGAAGGTGAAGAGACAGGAAGTAAAGGTCTCATACACATCCAAAGTCTTCCTGCAGCACGACAGGATGCCCAGTGCCAACAATGAGGACACTGCTGGAGAGGAAGTGACTTCACAGCTGTTTAAAACCAAAAAGACTGTGAGCAGGAATACGGGTCAGACCTCTGAGCCGAGGGAGCCGGCCGAGGGGAATCTGGAAACAGAGCAGAAGCTGGAGAAGATCCGGCGAAGCCACCAGGAGAAAGAGAGCCAGGAGCTGGAGCATCTCCGCCTGCGGCAGGCCGAGGCCGAGGTGGAGCTGGAGGAGCtcaagaggaagagagaggagagacggAGAGTCCGTGAGGAGGAGGAACGCaggagagaagaagaggagcATCTGAGGCTGGTGAAGGAGGAGGATGAAAAGAGGCAGATGAAGGAGGATattgagaggaggaggatggaggCAGCTGAGAAGAGGATGAAGAACCTGAGCACATCCAGCCCAGATAAAGATGATTCCTTTAACCCTCTTAGTCCAAAGAGTCACACtaataagAGAGAGCATGAGGAGAGATTGACAGCTGAAAATACATGCTTGATTACAGAGAGAACAGAATCCTTGAATCGATCTTTAAAGAAAAGCAACAGTTTTAAGAAGACTCAACCACCGGTACTGCTGTCGAAGATTGATGACAGACTGGAGCAGTACACTCACGCTGTGGAGATCTCAGCAAAAGAACCAAAGACAGTCAAAGCAGCTGCAGTGGACATGCCCAGTGTTCCTGAACCTGTCACAGCCAAAAAGAATCTGTTTGAGGCAGGAGAAGCCTGGAACCAGACCACATTCAAAGGAACTCCATCAAAGgaCACTGAGGGGCTGAAGGTAGCTGTGGCTGAACGTATCACTCAGTGGGTGAAAGGGAGCCCAGAGAGTGGCAACAAAAACATGCCCTCCAAACCATCCgATGTTAAAGCAGGAGATGTGCTACAAAAGAAGAACATGTGGGAGATCATAGGAGAGGGATCAGCAGGAGGGCAGTCAGGAGCTGCAGGGAAgaacACCTCTGCTGGTAAACGCTACAAATTTGTTGTGACTGGCCATGGCAAATACGAGAAGATTTCCATCGATGATGACCAGTATGATGGCTACACAAACGGAAAATCGAGTGACCTGTGCCAAAGTGACTTGTAAAGGCCTGCTGCATGCTACCATGATGCGGTTATCTGGAGGATTTATTTACATTACCAAATTCATATCCATAAATACCACAGGCAAATGTCAAACAATGTAACAGCACATCTTGGTTGAAGAGGTCCACAacagttattattttatcatacaAATCACATACATAATTATATCAGTAGGTCATAAAGAACATGATGtttacttcttttctttttcctcacttgtccttgtttattgtttttagacCACTGCATCAGATTACTATGTATTGTATTTGTCTTATTTGATTGTGCTTTTATCTTATATTCATTATGCAACATTTGCAATTATATTATTCAGAGTTTAAAGTTTGTCAAGACTTTGTTATGTTGATGTAAATAGGATGTCGGAAATGAAAGGTCACTGTGATGCGCTGGAGTTGGTCTAGAGGACTCTAAACCATAGTCTAAAGCTGTGTTTGGACTATGGTATAGACTACAGTAAATTTCAAGGAAAATCAAATTCTTATTTAGAGAACACTGGCCTTTTAATATACCTTTTGGAAAAATGGCCTTTTTGAACTGGGTCaccaaaattatatttttcattgtACAGTTCAGTCCAGCTCACCATTTATGATATATATGTGGGAAACATCTGTCATTGATGGGCATAATTTGAGCCACTAGGATACACAAGgtatattttacacatacatatatgcaGCCAACAAAGTGCAGGCTGCTCTGGTCAAATGACACATTTGGGTACCTaagaaaaatcaaataaatgtaatttatattattattttttgtcaataGGTTAAAttgtgacaaaaaaataattatacttatAGTGTGGATAAGTGCATGCTCTTTAGGGAACGTGACTTATTTACACTTCATCAACACAAAATTTGATCAGGGTTGAAAGACTTTTGCATATGACTGTAAgacttatatatatactgttttagGATTTAAGGCTTTTTCTGTTGTACTTGTATTTTGTTGAAtaaatctgtctttttttattcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA downstream 222724 11734144 ~ 11734846 (-) True G72974
TU98401 lncRNA downstream 224421 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 725892 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 731616 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 825297 11079088 ~ 11132273 (-) True G72857
TU98475 lncRNA upstream 52425 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 129335 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 198372 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 198372 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 506662 12502863 ~ 12539230 (-) True G73119
XM_022672133.1 mRNA downstream 3781 11944425 ~ 11953789 (-) False LOC103031503
XM_022672130.1 mRNA downstream 3781 11944425 ~ 11953789 (-) True LOC103031503
XM_007228098.3 mRNA downstream 3784 11944425 ~ 11953786 (-) False LOC103031503
XM_007228099.3 mRNA downstream 3785 11944425 ~ 11953785 (-) False LOC103031503
XM_022672132.1 mRNA downstream 3785 11944425 ~ 11953785 (-) False LOC103031503
XM_007228105.2 mRNA upstream 37088 12033289 ~ 12036047 (-) True LOC103034366
XM_007228108.3 mRNA upstream 40474 12036675 ~ 12041062 (-) True LOC103035544
XM_015601020.2 mRNA upstream 40474 12036675 ~ 12041039 (-) False LOC103035544
XM_022671913.1 mRNA upstream 52584 12048785 ~ 12051489 (-) False LOC111193053
XM_022671914.1 mRNA upstream 347274 12343475 ~ 12348986 (-) True LOC111193054
XR_002650239.1 other downstream 181431 11767509 ~ 11776139 (-) True LOC111193095
TU98300 other downstream 412347 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 412434 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2732011 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2783261 9165878 ~ 9174309 (-) True G72449
TU98666 other upstream 568147 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 568147 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 568147 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 614633 12610834 ~ 12621356 (-) True G73172
TU99163 other upstream 2546008 14542209 ~ 14545438 (-) False LOC103025073

Expression Profile