RNA id: XM_022672149.1


Basic Information

Item Value
RNA id XM_022672149.1
length 6902
RNA type mRNA
GC content 0.47
exon number 49
gene id LOC103039298
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12490584 ~ 12547678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTGTGCCGCTGGTCAGAGCAGAAATAacgactgtttttttttacgaatCTATATGTTTGGTCATTGCATTTATTCAGAAACGAGAACAGAGCAGAACAAACTCATTTTTGGTTCGTAATCGATGGACTTTTAACAGTGAAACCTTTGTGAGCACTTCGAGCGCCTCGTAGTTTTATCACTTTTTATCACCTAAATCAAACACGGCCTGGACCTGTAGCATAATTGAAACCGCTCCAACTGTAATAACTTACAAAATAGCTAAAGGCAAAGTTCACGCTGCCCCTCCTCCGCCCTTCTTACGCAACGCCACGGACCCACGCATAAGAAACCTGCAGCGgccccgcagcagcagcagctcagcctCAGAGAGAGATCCTGAACATCAGGACCGAGGAGCTATGGGGGGCTTAGCGCTGCTGGTGTGCAGTGTAATGGGGGCGGCCCTGCTAAACCCAGCCGCAGCAAACCAAGGACCTGTTGTTCAGACTAAACTAGGGGCTCTAAAAGGTGAGTATTTGACGGTTAAAGGGAAGGACACGGTCGTCCACAGCTACCTGGGTGTACCGTTTGCAAAGCCACCATTGGGACCTTTGAGACTCGCCCCACCACAGCCTGCAGAAGCATGGGAAGGAGTCCGAGACGCCACACAGCAGCCCTACATGTGTTTACAAAAAAGAAAGTTTCTTTTGGATATTATAAAGACAATGTCTGTGAATACTGAAATTCCTGAGGTGTCAGAGGACTGTCTCTACCTAAATATTTACACACCCTCTAAACCAGATGAAGATGCCAAGTTACCTGTATTGGTGTGGATACATGGTGGAGGATTTGTCTTGGGCGCAGCCGCCATGCAGGACGGAAGTGGTTTGGCAGCCTATCAGAATGTTGTTGTGGTGATAATCCAGTACAGGCTCGGATTAACCGGATTTTTCAGCACAGGGGATGAACATGCTCCAGGAAACTACGGTCTCTTGGACCAGTTGGCTGCACTTCGATGGGTCCAGGAGAACATCCAGAGCTTTGGAGGAGATCCTGCAAAAGTCACCATCTTTGGAGAGTCTGCAGGAggagtcagtgtgtctttgcagATTCTGTCACCAATGTCTGCTGGTCTTTTCCGCTATGCCATAGCCCAGAGTGGCACTGCTGCAATGGATGTACTCATGACAAGTCACCCTTTACCAGCGGCTCAGCGTGTAGCTAATGCTTCAGGCTGTGATATCTCCAGCATTAAGAAGATGGTTGAGTGTGTTATGCAGTTGTCAGAGGAGGAGCTTGTAAAGATTGCCCAAAATgcAGAACTGGGTGTACAAATAACGACAGATGGACAATTTCTTCCTAAACCTGCAGAAAAACTTCTTCAGAATAAAGAGTTCAAAAAAGTGCCGTTAATTACTGGTGTGACTGACGATGAAGGTGGATATTCACTCCCTAATTTCCTTGCTCCACCTGACTGGGTTGATGGAATGGAACGAGAGAAAGTCCTGTCACTGATGGCTGCCATTTTTCCTACCTTTGGAGACAAATCAATTCATGAAGCTTTGCTGAATGAGTATGTGGGCACCACAAATGATCTGATTAAAATTCGAGATGGTTTTAGAGAGATGTATGGAGACATTATGTTTAATATTCCTGCACGCATAACAGCACAACACCACAAAGATTCTGGCGCTCCAGTGTACTTGTATGAGTTCCAGCATACTTTCACTGAACTGAAGAAGAAGAGACCCAGCTTTACTGGGAGTGACCATGCAGATGAGCTTCATTTTGTGTTTGGTAACTGCTTTGTAAATGGACGCATGAAAATTCTTGGTCAGttcacagagaaagagaatgaactGTGTAGAACCATGATGGCCTACTGGGGGAACTTTGCTCGCACTGGATCTCCAAATGGACCGGGTCTGACACCATGGCCTGAGCATGGAGCTGATGCTGAGTATCTGGCCATTGGGCTGCAGCAGAAACCCGCCAAGAACCTGAAGGAAAAACACTATACTTTCATAACCGAGACTCTTCCACGCCTgataagagagaaaaaggatgGACCTGTTGTTCAGACTAAACTAGGGGCTCTAAAAGGGGAGTATTTGACGGTTAAAGGGAAGGACACGGTCGTCCACAGCTACCTGGGTGTACCGTTTGCAAAGCCACCATTGGGCCCTTTGAGACTCGCCCCACCACAGCCTGCAGAAGCCTGGGCAGGAGTCAGAGACGCCACACAGCAGCCCAACATCTGCATTCAGAGCAGACCTCTGTTTGTTCAACTTTTACAAATGTTTGCTGTAAACATGGACATTCCTGAGATCTCGGAGGACTGCCTATACCTCAACGTTTACACACCTGCTAAACCTGGTGAAGATACCAAATTACCTGTCATGGTGTGGATCCATGGTGGAGCATTTACCATAGGCTCAGCCTCCATGCAGGACGGAAGTGTTTTAGCAGCCTATCAGAATGTTGTTGTGGTGGTAATCCAGTACAGGCTTGGGGTACTCGGATTTTTCAGCACAGGGGATGAACACTCTCCAGGAAATTATGGTCTCCTGGACCAGGTGGCTGCACTTCAGTGGGTGCAGGAGAACATTTACAGCTTTGGAGGAGATCCTGGAAAAGTCACCATCTTTGGAGAATCTGCTGGAGGAGTCAGTGTGTCTCTACagATTCTGTCACCACTGTCTGCTGGTCTCTTCCACTCTGCTGTAGCACAGAGTGGCAGTTCGGCAGTAGATGCAATCTGGGCTTCCGATCCTTTACCAACAACTCAGCATTTAGCTAATATATCCGGATGTGACATCTCCAGCTCGAAGACGATGGTTGATTGTGTTATGAAGTTGTCAAAGGAGGAGCTTTTGAGGACTGCGGAAGCTgaGGGACTTGTCTCAGTCCAAGTAGCAAAAGATGGACGATTTCTTCCTAAATCGATAAAAGAACTTCTTCAAAACAAGCAGTTTCACAAGGTGCCACTTATGACTGGTCTGACTGATGATGAGGGTGGCTTTGGACTTATTGATTTTCTTTTACCTCAGGGagagtggatggatggagtaGACCGAGAGCAAGTTATGGCATTTATGCCTTTCTTTTGTACATCCAATGACAGATCGGTTCACGAGGCACTGCTGAATGAGTATGTGGGTCCCAGAGATGATCGGATTAAAATCCGGGATGCTTTAAGAGAGATATATGGAGatgttatatttaatattccAGTGCGCCGAATGGCAAAACACCAGAAAGATTCTGGAGCACCAGTGTACATATATGAGTTCCAGCATACTTTGACTGATATCAAGAATAAAAGACCCAGCTTTGTTGGCACTGACCATGGAGATGagcttcattttgtttttggcTCCTGCTTTGCAAACGCACACATTAAGATACCAAGTCAGttcacagagaaagagaatgaactGTGTAGAACCGTAATGGCCTACTGGGGGAACTTTGCTCGCACTGGATCACCAAATGGACCGGGTCTGACACCATGGCCTGAGCATGGAGCTGATGCTGAGTATCTGGCCATTGGACTGGAGCAGAAACCTGCCAAGAACCTGAAGGGAAAACACTATACTTTCCTAACCGAGACTCTTCCACGCCTgataagagagaagaaagatGGACCTGTTGTTCAGACTAAACTAGGGGCTCTAAAAGGTGAGTATTTCACGGCTAAAGGGAAGGACACGATCGTCCACAGCTACCTGGGTGTTCCGTTTGTAAAGCCACCATTGGGCCCTTTGAGACTCGTCCCACCACAGCCTGCAGAAGCATGGGAAGGAGTCCGTGACGCCACACAGCAGCCCTACATGTGTATCCAGAACAGGCAGGCAACTGTGGATCTCTTTGCCAATTTTTCACTGAGTATGGAGATTCCTGACATATCGGAAGACTGCCTCTACCTCAACATTTACACTCCAGCAAAACCAGCTCAAGATATCAAGCTTCCTgtCATGGTTTGGATTCATGGTGGGGGGCTGAGTTTGGGCTCTGCATCAGTCTATGATGGATCAGTTTTAGCTGCATACCAGGATGTAGTTGTAGTACTGATCCAGTACAGGTTGGGTCTGTTAGGATTCTTTAGCACAGGGGATGAACACGCTCCAGGAAACTACGGCCTCCTGGACCAGGTGGCTGCACTTCAGTGGGTGCAGGAGAACATCCACAGCTTTGGAGGAGATCCTGGATCCGTCACCATCTTTGGCGAGTCTGCAGGAGGAGCCAGTGTGTCCTTTTTGCTCCTCTCTCCATTGTCTGCTGGACTGTTCCATCGTGCAATTGCAGAGAGTGGCTGTGCTACAATGGGAGGTATGATAGCGGATCCCTTTCCTGTAGCCCAGCATGTGGCCAATGTTTCTGGTTGTGACATCAGCAGCACAAAGAAGATTGCTGAGTGTGTAAAGCAGTTGCCAATAGAGGATATCAAAAGACTTACTGAAGAGaGTGCAATGTTGCAGTTTGTAGTAACAGAAGATAAAGCATTTTTGCCCAAACCTGTGAAGGAGCTCCTTCAGAATCAAGAGTTCCACAAAGTGCCACTAATGATTGGTGTGAATGATGACGAATTTGGATGGGTGATGCCCAGTATATTTCTTACTCCAGAATGGGCTAAAGGAATGGATAGAGAACAAGTTCTGTCAGTAATGAATGTCTTCGATTCCAATAAAAGACCTCGGTGGATCAATGAACTGCTGGCAGACGAATACCTGGGCTCATCTGTTGATCCGATTAAAATTCGAGACAGTTACAGAGAGATGATGGCTGATATAATCTTTAACATTCCTGCACTCTCACTAGCAAAATTccataaagCAGCTGGAGCGCCAGTGTACTTCTATGAGTTCCAGCATCCTCCCAGCATGTTCCAGGTAAAAAGACCCAGCTTTGTTGGGACTGATCACGGAGACGAAGTTTACTATGTTTTTGGCTTGTGCTTTTGCTTTGacACTTTCACGGAGAAAGAGAATGAACTGTGTGGGACTGTAATGGAGTACTGGGGGAACTTTGCTCGCACTGGTTCACCAAATGGACCAGGTCTGACACCATGGCCTGAGCATGGAGCTGATGCTGAGTATCTGGCCATTGGGCTGCAGCAGAAACCTGGCAAGAACCTGAAGGAAAAACACTATACTTTCATGACCGAGACTCTTCCACGCCTgataagagagaaaaaggatgGACCTGTTATTCAGACTAAACTAGGGGCTCTAAAAGGGGAGTATTTGACGGTTAAAGGGAAGGACACGGTCATCCACAGCTACCTGGGAGTTCCGTTTGCAAAGCCACCATTGGGACCTTTGAGACTCGCCCCACCACAGCCTGCAGAAGCATGGGAAGGAGTCCGAGACGCCACACAGCAGCCCAACATGTGTATCCAGAAATGGAAAGCAAATGCAAACCTCTTTGCCAATTTTTTACGGAGTGTGGAGGTTCCTGACATATCGGAAGACTGCCTCTACCTCAACATTTACACTCCAGCAAAACCAGCTCAAGATATCAAGCTTCCTgtCATGGTTTGGATTCATGGTGGGGGTTTTAATGCGGGCTCTGCATCAATCTTTGATGGATCAATTTTAGCTGCATACCAGGATGTAGTTGTAGTAGTGATCCAGTACAGGTTGGGTCTGTTAGGATTCTTCAGCACAGGGGATGAACACGCCCCAGGAAACTACGGCCTCCTGGACCAGGTGGCTGCACTTCAGTGGGTGCAGGAGAACATCCACAGCTTTGGAGGAGATCCTGGATCTGTCACCATCTTTGGCGAGTCTGCAGGAGGAATCAGTGTGTCCCTTTTGCTTCTCTCTCCGTTGTCTGCTGGACTTTTTCATCGTGGAATTGCAGAGAGTGGCTGTGCTGTAATTGCAGGTATTGTGGAGGATCCCGTTCCATCAGCCCAGCATGTGGCCAAAGTGTCAGGTTGTGACATGAGCAGCACAAAGAAGATTGCTGAGTGTGTAAAGCAGTTGCCAATAGAGGATATCAGAAGACTTACTGAAGGGGGTGTGAAGCTGAAGTTTGTAGTAACAGAAGATAAAGCATTCTTGCCCAAACCTGTGAACGAGCTCCTTCAGAATCAAGACTTCCACAAACTGCCACTCATGATTGGTGTGAATAATGACGAGTTTGGCTGGCTGATACCCAATGCAATTATGTCTCCAGAATGGGCTAAAGGGGTGGACAGAGAGCAAGTTCTTTCAATAATGAGTGCCTATGTTcctaatAAAAACCCTCAGTGGATCAAACTGCTGGCAGACGAATACCTGGGCTCATCTGTTGATCCGATTAAAATTCGAGACTGTTTCAGAGAATTAATGGCTGATATATTGTTTTACATTCCTGTTCTCTCACTTGCAAAATTCCACAAAGCAGCTGGAGCGCCGGTGTACTTCTATGAGTTCCAGCAGCCTCTCAGCATGTTCCAGGTAAAGAGACCCAGCTATGTTGGGGCTGATCACGGAGACGAAATTGCCTTTGTTTTTGGCTTGTGCTTTGGCAATGGCCACGTTACAAGGACTGgctCAGTCACAGAAAAAGATAATGAACTGTGTAGAACTGTGATGAACTACTGGGGGAACTTTGCTCGTACTGGTTCACCAAATGGACCAGGTCTGACACCATGGCCTGAATATGGATCTGATGTTGAGTATCTGGGCATTGGGCTGGAGCAGAAGCCTGGCAAGAACCTGAAGGCAGAGCATTACATCTTCATGACCGAGAAACTTCCAGAGCTGGTGCGTTCAGCTCAGGAGAAGGAGCACAGTGAGCTGTAGAAAAAGCTAAAGCTTCAGAATTTAGTTAAAAACTTAATGTCAATGTTTCAAAATGAACAAATCTAAAAAGAAcatctaaatattttatattaaaaaaatagtctgGGTGTGTTTCATTCTTAGTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98553 lncRNA upstream 34581 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 42071 12445693 ~ 12448514 (+) True G73081
TU98513 lncRNA upstream 293875 12194572 ~ 12196710 (+) True G73045
TU98514 lncRNA upstream 293875 12194572 ~ 12196710 (+) False G73045
TU98497 lncRNA upstream 359787 12130562 ~ 12130798 (+) True G73031
TU98580 lncRNA downstream 9956 12557634 ~ 12557852 (+) True G73091
TU98665 lncRNA downstream 16455 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA downstream 16668 12564346 ~ 12564792 (+) False G73146
TU98715 lncRNA downstream 91567 12639245 ~ 12641822 (+) True G73177
TU98733 lncRNA downstream 116289 12663967 ~ 12669729 (+) True G73189
XM_022672142.1 mRNA upstream 5176 12458545 ~ 12485409 (+) False LOC103039191
XM_007228121.3 mRNA upstream 5176 12458548 ~ 12485409 (+) True LOC103039191
XM_022672141.1 mRNA upstream 5176 12473574 ~ 12485409 (+) False LOC103039191
XM_007228122.3 mRNA upstream 5176 12473845 ~ 12485409 (+) False LOC103039191
XM_022672140.1 mRNA upstream 73228 12365365 ~ 12417357 (+) True znf469
XM_015601056.2 mRNA downstream 21159 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA downstream 21160 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA downstream 21164 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA downstream 21165 12568843 ~ 12587543 (+) False fanci
XM_022672155.1 mRNA downstream 132428 12680106 ~ 12715658 (+) False man2a2
TU97933 other upstream 2408445 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3341166 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5605044 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5951791 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6452837 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 55674 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 323806 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2101151 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2343856 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3738998 16286676 ~ 16288329 (+) True G74169

Expression Profile