RNA id: XM_022672166.1


Basic Information

Item Value
RNA id XM_022672166.1
length 1691
RNA type mRNA
GC content 0.54
exon number 7
gene id trim44
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14078012 ~ 14161299 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacactcagagagaTTTGTAGTGGTGTaatcagtctctctttctctcttttagctCTCCCGGCTCCGGCTgcagaaacaggaagttgtgaaaaaaataagcagCAGAGCACGGATCAAAACAAGGAAGTGGAGGGTGCCGAGCTCAGCtggaaagagaaagcagatcaggCCACAGCAATGCTAAGGAAGGAAGCTAGCTGCTGGAGTGTTAGCCTGCTGCTCAGTGACAATAACTCTTTGAGAGAGGGGAGACCTGCGACTGTATTTCAGACACACTGCGAACACACTGAGGATTAGAGCACACGGACAAGCAGCAGCAGAGGGGAGAAAAcactgtgagtGCTCCCCTGGGATCCTCTCTCTCCTGGTCTACCTGCACCATGAATTCTCCAGAAGCATGCTGGGATGTTGACGACTTGCCTCAGATGGACGGCACCTGCGATGCCTGTGAGCCTGATGAGGCTTTGCCGGCCACGCAGTTGTGTGCGCTCTGCCGCTTTGCCTTCTGCTCCGACCatgcagaaaaacacacactcagcaccaGGCACCAGCTTCAGCCTTACTTCCCAGACCAGCCTCCAGAACCAGCCCAGCGAGTCAACGGCTGCGGCCAGGCAGAGGTGGCCGAAAATGGGCTGGAGGTGGCCGAGGCCGCTGGGGGAGAAGGCCGTGAGCCAGAGGAGGAGGACCAGCAGAGTGCAGCCGAGACAGGAAAGAGGGACACAGTGACCGTAGAGAGACTAAGGTGTCAAGAGCATGGACAGGAGGGGTCGCTTTACTGTAAACAAGACCAGaagattgtgtgtgtggtgtgtgccgTGCAGGGAGAGCATCGAGAACATGAGATCATCACGCTCAGAGAGGCCTACATGTGGCAGAAGaGTAAAGAGGGCATAGACCTGCTTGCATGCACTCAAGAAATGTCAGAAAAGATCCAAACCAAGTGGACGAGTCCAGATATGAGCCCGGATGAGCTGGAGCGCTATGTAAACCAGCAGTTTGACGAGCTACACAGACTGGTTCGACTCGAGGAGTGGCGTGTGCTGCACCTGGTGGACCTGAAGGAGGCCTTCCTGACAGCGCAGGCAGCAGAGAAGATCGCAGAGATCAGCGTTCACACGGAGCGTCTGCAGGAGGAGATGGACTCCATCACACAGCAGCTGGGGGAACTGGATCAGGCTGAGCGCAATGGTGTCGCCCCGGCTGCACTGGCTCCTCTGCTGGCTGCCCAACCACAGCCGCCCCGCGCACCACCAGAACCCAGAGCAAGGATGGACCCTGAGGCCAGGCCAAGgCATGATCACCGGCGAGGCCCAGAGGACCATCGCGACTATGGAGATGACGGAGACTCATTCATGGGACATGCACCATAACATCAGCAAAATGCCCACAAATCTCCACATATCTCTGCTCTCCTACTTGCTTATCAGGGACAGAACACTGGAGTGGACTGCTTCGGGGTATCAGAACTGCATTGTAACCACCAGTTTGATATCCCGGATTTGTTGCCTTTTTTCTATTCAATCTAAACTGACTGACTTTTCCTGATGAAGATAATGGAATGAATGAGCTTGCTTACAATCAGGAGCCAGCTTTTCTCCCAGCCTTCAATTGTGCGTGAAATCAGATGAGGGGCTGGATTATTTCCTGcataattaaacacagaatgaAAATTGC

Function

GO: NA

KEGG:

id description
K12020 TRIM44; tripartite motif-containing protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99021 lncRNA upstream 7628 14070044 ~ 14070384 (+) True G73423
TU99020 lncRNA upstream 9218 14068583 ~ 14068794 (+) True G73422
TU99016 lncRNA upstream 70877 14006822 ~ 14007135 (+) True G73419
TU99014 lncRNA upstream 72788 14004653 ~ 14005224 (+) True G73417
TU99013 lncRNA upstream 74586 14003072 ~ 14003426 (+) True G73416
TU99012 lncRNA downstream 1528 14162827 ~ 14163220 (+) True G73415
TU99010 lncRNA downstream 2045 14163344 ~ 14164340 (+) True G73414
TU99043 lncRNA downstream 3495 14164794 ~ 14165656 (+) True G73443
TU99066 lncRNA downstream 105477 14266776 ~ 14269724 (+) False G73464
TU99067 lncRNA downstream 105477 14266776 ~ 14268915 (+) True G73464
XM_007228159.3 mRNA upstream 66292 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 249590 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 312962 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 400936 13669622 ~ 13677076 (+) True ehf
XM_007228150.3 mRNA upstream 401171 13662809 ~ 13676841 (+) False ehf
XM_022672167.1 mRNA downstream 76740 14238039 ~ 14389321 (+) True ldlrad3
XM_022672169.1 mRNA downstream 385498 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 394721 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 394721 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 429304 14590603 ~ 14595936 (+) True LOC103026417
XR_002650241.1 other upstream 1180081 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1474588 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 3995872 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 4928593 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7192471 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 487530 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 730235 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 2125377 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4293552 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4921517 19082816 ~ 19085556 (+) True G74832

Expression Profile