RNA id: XM_022672167.1


Basic Information

Item Value
RNA id XM_022672167.1
length 4428
RNA type mRNA
GC content 0.43
exon number 6
gene id ldlrad3
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14238039 ~ 14389321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCGAGGCGGAATGCGGGTGTGGAAAAAACGCCACCCCACACACGGCTGTCCCAGCGGAGGAGCCCAACCTCTCCGCAAGTCCGAAAACTTTGTCCTGCAGGGGGAAGAAAAAAGAGCGGAGCGGGAGCAGAGCGGAGCCGGGGCGATAAGTGGAAATCGAGGAACTATAAAACCGCCCCGGTTGTTGGCCCACAGCGGGGTGAAGCGGAGGGGCAGGCCGAAAAAAAGATACGGCGTGAAGGATGTGGGTCTGGTACCTCCTGCTCGGTTCGGGCACGGGCTCCAGCTCGGTCGACAGCCAACTTCTTCCTGGGAATAACTTTACCACCGAGTGCAACATCCCAGGTAACTTCATGTGCGGGGATGGGTTGTGTATCCCTGGAGGCTGGCAGTGTGACGGTTTTCCTGACTGCTTCGACAAGAGCGATGAGAAAAAATGCCCAAAGTCCAAGTGTGCGCCCACATTCTTCGCCTGTGCCAACGGGGTGCACTGCATCATCGGCCGCTTCCGCTGCAACAACTTCCGGGACTGTCCCGACGGCAGCGACGAAGACAACTGCActggTAATCCTCTGGTCTGCTCGTCAGCACGCTTCCACTGTCGGAATGGACGCTGTGTGGACCACAGTTTTCTCTGTAATGGGGAAGACAACTGCCAGGACAACAGCGATGAAGAGAACTGCTTTTCTACAGCAGAGTCTCCAGGCCAGGACTTCGTAACACTCGACTACCGGCTGCGCTACTACCCCAGCATCACCTACGCCGTGATAGGCAGCGCCGTCATCTTCGTCCTGGTGGTGGCGCTGTTAGCACTGGTCCTGCACCACCAGAGGAAGCGGAGCGTCCTGTTGCCCCGGGGGGTCCGCGGAGGcccccaccaccatcaccaccaccagcccCTGCTGCTCTCCAGGCTGGTGATAGTGGACAGGGGTCTCTCTCCACCCTCCTCCTCTCCATCAGGACTGTTCAGCTCAGCCCACAGCCTGCAGCTGCTCTCCAGCGCCCTCTACCCCCGAGGAGGTCCACTCGACTCACCGCCCTCATACTCACAGGCTGTAATGGACGTCAGTCGACCCCCGTGGTTTGACCTCCCACCTCCTCCGTACCCTCCTGACAACGGAGCTCCATGTGAGAGAGAGCCACCAATTTACGAAGTTTCTGCAGAAGAGCCTGAGACAGCCCTGACCCGAAGCGTCACCAGCAGCGCGAGAGCTGAGACAGGCCAGTCCCGCAACAACAGCTCCAGCTCCGGCTCTCGCTCTGGCGCCGGCCCCGGCTCAGGCTCAGGCTCTCGCGCCGGCTCCAGCTCCACAGAGGAGTCTCAGCAGCTGTAGCCCCTGCAGCGAGGAGACGGACACACTtgtacataaaacacacagacatataGAGGGGGACTGACCCTCTATAGCGACACAAGACCAGGAGACCCTGAGACCATGAGTCTCTTTGCGTAGGAAGGATATGAGCACTGTGGACTCTCAGCTGGACTTTCTTCAGGGTTACAACTCCCGCCACAAATGGACACTCTGTCTTCAGCTTCCTGCACTTTTTTCCTGTGTTGGTGGAAGGCGCCATCTTCTGGTGAACATGCGACATGACGGCTCATGAGAGAACATGAGGAAATGGTTCAGAAACTGAGCAGGAaggaagcagcagcagatcatATGAAGTGGATGCTTGCTTTACCAGGCCTCTGAGACGTATACCCTAAACACAGGGTACACTACATGACTGCGCAGACACTGCGTCGCGTCGGAAACGGGACGCAGTCGTGCATCGAGAAGTATAGAGCATCCTCAATAATAAGTATTGAGGAGCTTCCAAAAATGACTAAGCTGATTTCTGAGTTACAGACCGTTCATTcttcatattattaataatatgaattttcatttactttgttttgttttggtttcggtttttttcccctcatgtTTAACACTAAAAAATCCTACTAAACACTCACTATGCAATGTGACGTGAGCTGTATATGAGGTTTGaatgtgtaaaagagagaaggGCGATTTATGAGAAGAGTGATTTCATGTGTttacgaagaaaaaaaaaatctaccccATTTCCATCACTGAAGCACTTCAATGAATTACCTCTTTTTCATAGAAACTCAGAAACTCTTTGTTGTGGCCTTGCTCTTGAAGACAGATGGAACGAaattccattattattattattattattattattattatgattattattgctattataaTGCTGttgtagtattatttttaattctctgTCTTTATTCTACAACATTTCTACGAAATCTGTCTgaaatgaaagctttttatagTTCGTCTGAatctgtaaaagtaaaaatacagcaCCGCTCTCTTCTAAAAAACCGACTGCATGCTGTAGGAATAGTTGAATATTCTGAGATATTTGGACATATTTGGAGATATTCGGAGCATGGCATATTTAGTGGACATCAGGCATATTTAAAGCCACAGTGCCTTACACTCAGAAGCCTTTGGATTAACAACATGTAACTAAATGTCCATAACATCAAAAATCATCATCTTTGTCTGTTAAAGTCACATGATCACTAAGTATGTGACTCTTCTGAACTGGTCTCAGTTCAGATTTCCAGCTCCGACCCAGATAGAGAGTTTTGGGGCAGCTGAAACACGAAGCACATGGAGCAGATAGAACACTCAGACTTGCTATATTAGTTCATATGTGAATAAATGCAGCACCAAAGCCCATTTTTGACATTACttacataaataaagtaaataataaaaaaaaaataataataatctaggTCCAGAGACACTCTGGTTCTCTACGCTCTCAGTGCACACTTAACGTAAGgggctcttaaagggacagtggacacattactgaacactggccgtttgaactgtttttgtatttgaCAATCTGTGTATCTTGTTCAGTATTAGTATTAAATGTGCATTGTGTAAAATAGGTTTATACAAATTTATTAGACCCCCCCTATCAAAGAAATGACTCCTGGTTATAcaggttttatatatttcatgtaTTTGTAAACTGCATTTTGCAACTACACTCAGTTGTTAGCAAAGGTCTGTACTTTTCACTTCTCTTTGATCAAggtttgcattaaaaaaaacgcaAAGTCTCATATTTATACTCTCTTTACGTATTAAAATGAATCTGTCGACATTGAATTACGCGTCATCACTTATAATTATACAAACACTAGAAAAACAGCGCTGTAATTATTGACATGTATTTGTATTGATTGATTACTAAGATATACTTTAAAGAGGTACCATTCGATGCGATGcgtaccatttaaaaatgagtgaaatacaccctggaggaaaaaaaacaaatgtataaaaacaccTTGCGCAATGGTGtacaataatgtaataaattctTTTGAGTGTTAAAAGAACAAATtgaggtttttaattattttttttataaattatttcacATATTTCCATATTTAGGTCTGAAATCCATTTCTATGGCTgaattctgtgatttttttctatGTTCTCTGTTACAACCATATCTGGAAACTTCAGAAATGTGCATAAATGCAGACAAAACGAATGCACAGTATGAACAGAAGACTCCGTCCGAATCCGTATATTTAACACCGAGCATCAACGAGGCGTCAACTGACAGACAAAATGCGACGTGCGAAGATGacgactttttttgtttgttttattttaagttcagTAACAGCCTTGTTGTGAAGGATCAACTCAAACTTCTGAGCCTCttcctgtattttctttttttttcacctgacGTGAAGGCTTCTTCTCTAAATATATAATGCTCATGTGGGCGGTGGGAAGAAGTGGTGAGAAGTGGTATGTATTTAAGAATTAATCTTATGAacataaatattgtaaaatgaaaatatgatcAACTGGACAGAGTcaaagtgtgtaaatgaaaagtatcactttattatttctgtctttctgttgaCACctggccattaaaaaaaaaaaaagaagaagaaaacagtACTCCCAATGAGACATTTCCTCTGTTCCATTAGAAATGTAGAGATTAAATTTTACCAAAGCAGAAAATCATATTGTTATATGGAAtcaagttttaaaataaagactacAGCTCGTGTTATCACTGTACAGTATCTCTGGAGTGAAATCTTGTGTCTGTACCCGAAACTTCTTGTGTCTGTACAAAGAACCCAACATTATCTGCATTATTCTGCTTTTCAGATTTAAGTCTCTTTTTGTCTGCTTTTACAGCAGTTATTCATAAATAACTATTAACTACATtcgacaaataataataatatattaccaTACACttcatttaaagaaacaaaaaaattacaattcaaactttttcacagcattaaaaaaagaaggggGGCATTTGTACCTCATCCGAAACTCTCCTTGCCTGCTTCcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99043 lncRNA upstream 72383 14164794 ~ 14165656 (+) True G73443
TU99010 lncRNA upstream 73699 14163344 ~ 14164340 (+) True G73414
TU99012 lncRNA upstream 74819 14162827 ~ 14163220 (+) True G73415
TU99021 lncRNA upstream 167655 14070044 ~ 14070384 (+) True G73423
TU99020 lncRNA upstream 169245 14068583 ~ 14068794 (+) True G73422
TU99136 lncRNA downstream 152877 14542198 ~ 14545513 (+) True G73514
TU99154 lncRNA downstream 225097 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 248626 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 257122 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 286552 14675873 ~ 14676794 (+) True G73566
XM_022672166.1 mRNA upstream 76740 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 226319 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 409617 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 472989 13694428 ~ 13765050 (+) True pdhx
XM_022672162.1 mRNA upstream 560963 13669622 ~ 13677076 (+) True ehf
XM_022672169.1 mRNA downstream 157476 14546797 ~ 14550920 (+) True rccd1
XM_007228167.3 mRNA downstream 166699 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 166699 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 201282 14590603 ~ 14595936 (+) True LOC103026417
XM_007228171.3 mRNA downstream 208644 14597965 ~ 14605957 (+) False slc25a3
XR_002650241.1 other upstream 1340108 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1634615 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4155899 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5088620 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7352498 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 259508 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 502213 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1897355 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 4065530 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4693495 19082816 ~ 19085556 (+) True G74832

Expression Profile