RNA id: XM_022672168.1


Basic Information

Item Value
RNA id XM_022672168.1
length 4771
RNA type mRNA
GC content 0.57
exon number 17
gene id LOC103024229
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14390685 ~ 14460388 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCAGCAGTGGGACGCTGTGATAGAGGGAAGGAGGAAAAGAGgataaaagagagacagagcgagtgaacagaagaggaggaggtggaggagtgggGGGACTCTCCCCTCGTTGCTGAGGATGAAGGGATGACACATTTGGCAGGCTTGTTTGTGGGACTGTTGGTTGTGAGTGTGGCTGTGTCCGTGCTGCTCGGAGCTCGGATCGGTCAGTGACAGCCCCGCAGTGCTGATGAGCTCTCTGACCTCTGCCTGTCCGCAACTTCAATGACTTCTCTGACCCGCGGACCCCCGGTTGGAGTGCTTTTCTGGAGCAGCAGGAATTGCCCCCCCCACTCATCTTACTGTCGGTTTTCCTGTCTGAGACCACCTGACCTGACTTCAGCATCCTTCACTACAGCATGTTCGGACTAAAGGCTCCACTCTACTACCTGTCCGGCATGAGCCATGAGCCAAAGTCGCCATCGTTAGGGATGATCTCCACAGCAACGCGCACCACGGCGACCGTCAGCCCCCTCACCCCCTCCCCCATCAATGGAGTAGTGGTGGCCAATGGGAGTCCAGTGTCTCAGTCTGCTCACTCCGGATTCGCCGCTGCCCTCCGCAAACTGGCCAAACAGGCCGAAGAGCCTCGAGgCCCCGCCTCCATCAGTGGTGAGTCGTCGCCTGTTTCGTCTCCGGCCACCAATCACAGCTCTCCTGCAGGCACACCTAAACGGGGTCCCCTGGCTCCCCCCCCCGGGGCCCACAGTGTGTCCAGCACCCCGCCTGTGGTCACCATCGCACCGACCAAAACAGTGAACGGACTGTGGAGGAGCGAGGGGAGGCAGGCTGAAGCTGGACTCAGAGGGCCTGGCCGTGACCGAGTGACCTCAGACCCACCTGCTCCCCATCCTCCCAGTGCCCAGGAGAAGAGTGCTGCCTCTATTCCTCCTCACCTTCTAGGGGCACATTTCCCTTTTGGTTTGAACCCCAATGCAGTGATGCAGGACCCTCGTCTGCAAGCGCTAAATTTGTCCCGTCAGGTGCCTCATGTTCTGCAGTCCGGGGCAGTACCCGCAGGGGTCCCTGAGGAATACCTGCGGGGTGGGTTCCGCCCCTACGCCTCAGCGGAGGAGCTGCGTGTGCCCTCACTCCCCCTAGGGCTGGACCCCAGtactgcagctgcagctgctgcgTACTTCCACTCAGGATACCTGCCCCACCCTGCTCTCTCCTCCtacaggATGGATGACCCACTCTGTTTATCTGCTCTGCGCTCACCCTACTACCAGCTGGCACCGGGGGGCGCCCTGCACTCCCTTCACCCCTCCACGGCCCACCTCCACCTGCCTGGGGTCCGCTACCCTGCAGACCTCAGCCATCAGTCTCTGACAGCTCTGCAGAACGAGAGGCTGCAGATGGAAGATAAGCTTCGCCAGAGGGAGCGGGagcgagagaaggagagagtgcacgaggcagagagagagaaagagcgagagagggagcggGAGAGGGAGCGCGAGAGGGAACGAGAAAGAGAGCGCGAGAgggagcgggagagagagaaagagagagagcgggagagagagcTGGAGCGGCAGAAAGAGCGAGCGAAGGAGAGGGAGGTGCAGGCCGTGCGGGCCATGGAGAAGCACTGTCTCAACAAGGAgctgtacacacactctcacacacacacactccctcacaggCAGTACATGGAGGAGAGGGCCAAGCTGGTGGAGAGACTCGCACCAAACCGACCAGAGAAAACCAAAGAGGCCTCAGTCCATACTCCAAAGCCCCTACAGCCCAGCCTGTACTCATCCCTCCCCACCCCCAGCCTGCTGTCCTCACCTGGGGGGCGGCTGGGCCCGAATGTAAGTTCAGTTCAGGGGGCCCTGGCGTCCGCAGTGATGCTCCAGCGCCAGGGGGAGGAGGAGAGATGGCTGGCCAGGCAGAGGAGGCTGAGACCGGAGAAGGAGGACAGACAGGGTCCAGTGTCTGAGTTCAGACCTCACGCTCCAGAACCGGGTCCAGAGCTACAGGAACTGCACAGGGACACACAGAGGTCTAACTCTCATCACCAGGAACACACCATGAATGCCAGAGACCTACCTCACCATCTGGGGGCACCACCTCCTCTAATATCCCCCAAACCACCTCCACGGGACCAGCCTGCTAACCCTCCCACCACTCTCTGGAACCCCGTCTCCCTCATCGACTCTCCCTCACACATGCGTCGAGGATTCGACCCTCCGTTACCCCCCAGCTGTCCACCGCCGGGGCTGACCAAACACGAGCGGAGCGAGGACGGGGTCCGGAGGCTGGAGTGTCCAGATAGGGTCCCTCCCCAGAGAGCACATAACCTCCTGGAGCACAGCACCTTCCTGGCAGACCTGGAGAAATCCACTCAGAACATTCTGAGCCAGCAGAGGGTCTCACTGGCCCTGCCTGGACCCTACGCAGAGCTCAGGGGCTTGAAGAGAGCAGCTTCGCCCATCAGGGCCTTCCCTCAGGGCCCGGTCCGAGCGGTGGAGCCCATGCTGGTGTACGACCAGGTCCTGCAGCAGCACAGAAGACTCCTCAGCAAACTGGATCTGGAGGAGAAGAGACGCAGGGAGGCTAGAGAGAAAGgttaTTACTATGAACTGGATGACTCGTATGATGAGAGTGATGAAGAGGAGGTCAGAGCTCATCTCAGGAGAGTGTCTGAGCAGCCGCCTCTCAAACTGGACCAGTCAAAAGAGAAAATGGACTTCCTCAATGTGTTTGGATTGACCACCCTCTCCTGCCGTGCTGATCTGttggagaggaagaggaagaagagaaggaggaTGATGAGAGAGCGCAGCCCCTCTCCCGTACCTGCGCAAAAGCAGACACCCCCCACGCCCACTCCTCCCCCCGCCCTGTCCACTCGCTACAGCCCAGAGGACATGGACAGTGTGCCTGACCTGGAGGACAAGAAGAACTTCCTCAGTATGTTCAGCCTCAACCACCTCAGCCAAGAGCAGAGAATAGagaaagaaaaagtagaGAACCTGCTGGATGCCATCAAACAGAAAACTGTGACTCTCGACACACTCCGATacgctacacacacaccctgctccAGCCCGCCCTCTACAGCCTCAGAACCTACAGCACCCTCCACGCCCTGCCAGTCAAATGAAGTGCCCCTCCCACATTCCCGGAGCCCCACCCCTCCTGCTCCTCACAGACACCTGCACAATAACGGTCAACAATCTGACCTCCGTAGACTCCAGTCTGACCCACCACGCCTTAAAGAGCCCCCTCCACTGGCCCCTCTGCAGGAACACCCCCGCTTCGGAGAGGTTCACCCCATCAGGAGACCCCCCAGCCTGCAGGCCAGCCCCAGACCCCCGCTCATCCCTCTGAAGGAGCACGTAGCTGGACGGAACGGTCTCACCGTCCGGCCTCAGCACTGGGAGAGCACCAGCGCCGAGGAGTTCGCCCAGCAGTTCCACCAGTCTGTGCTGCAGTCCACTCAGAAAACCAAGCACAAGCACAAAGGTGGCGTCACAGAGCCAAACCACAGGGTTCACAACTCCGTGCATTACAACCCTTCAGACCACCAGGGGGCACCAAACAGATTACCTTATTCTTACACCAACGGCAACTCCTGCCACCCGCCAGCTCGCCCAGAGCCTTCAGGGCTGAGTGATGAGCGATCCGCTGAGGAAGAGTCCAGTGAGGaagatgatgacgatgatgaagaGGAGTCTTATCGTCCTAAATGGAAGGGAATTGAGGCCATATATGAAGCGTATCATGAGTACATAGAAGagAGGAGTATAGAGAGTGAGGTTCTGCAGAGTGAGTGCAGGAGGCTGGAGGCTCAGCATTACCATCTGAGTGTGACTGCTGATCAGCTCTCCATCAACATGGGGGAGCTCCTGGCACAGAGGCAGAGGCTGGCGCTGGAGAGAGAGCGCATGCAGGCGGAACTCGAGCACTTCAGGAAGTGTTTGGCGCTGCCGGCGTTGCACTTGCACAGGGGACACTATAAAGGGCCGCCCCCAAGGTGACCCCCTCTCACCCTGCTGACTGATCATTAGGGAGCTGGGCATCCAGCACCCAGCTCCTTTCACCTGAGAGAAGCCTGGGGAGAGGACTCTGCACTGAGGGGCGACagtgaggaggaagaggaggccTGACCttttggcagcagcagcagcagcagaagatgatgaaaatgatgaagatgatgaaggGGAAGAGAGGAATAACTGGCTGCTGTCATGAAGAAGAGTGGAAACCAGCATTGAGAAGCCTCAGTGGATTTAATCCCTACAGCCAGAGACTGAAACCCCCCAAAACAcccacaaaataaaaagaatattaataataatgacagCCAATCGCCAACCCACTGCACCTCCACCCAAACCCTACCTGCAGGGCCAGTGACGGAGCAGCAGCTACACAAAATCAGCCAATCAGTGACTGGAGGAGATAAGAGGAACTCTCTGTTTTAATTCGAATTTAACTCCACTCCATCACGTGCTTGAAACCACGTCCTTCTTCCACTCCTCCGCTCATCCACTCAGTACCCAAGATGCACTTAAAACTCAAAACTGTTGACTCAAACCTCTGCTACGAAAGTGTGGAACAGAAACGACTGGCGGAGTTTATTGTTTATACGTTTATTACTGATAGAAGttgttttgaaaatgtttgaGTTTCATTGCTTGGAAAATCTGATGTAAATATTGCAACAGAgttttgtatgattttattattCGGATTGATTATTTGACTTTGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99102 lncRNA downstream 113579 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 318647 14070499 ~ 14072038 (-) True G73434
TU99030 lncRNA downstream 352317 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 383536 14006752 ~ 14007149 (-) True G73429
TU98957 lncRNA downstream 559928 13828718 ~ 13830757 (-) True G73371
TU99124 lncRNA upstream 7234 14467622 ~ 14468141 (-) True G73509
TU99167 lncRNA upstream 137563 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 138066 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 215493 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 248673 14709061 ~ 14797283 (-) False hbp1
XM_022672165.1 mRNA downstream 426659 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA downstream 426659 13920173 ~ 13964026 (-) True pamr1
XM_007228155.3 mRNA downstream 481082 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA downstream 507120 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA downstream 507130 13861550 ~ 13883555 (-) False slc1a2
XM_007228165.2 mRNA upstream 81808 14542196 ~ 14545536 (-) True LOC103025073
XM_007228164.3 mRNA upstream 90484 14550872 ~ 14554955 (-) True cib1
XM_022672170.1 mRNA upstream 106522 14566910 ~ 14574221 (-) True LOC103040849
XM_007228304.2 mRNA upstream 114407 14574795 ~ 14578518 (-) True LOC103041151
XM_007228175.2 mRNA upstream 154003 14614391 ~ 14619388 (-) False LOC103028140
TU98709 other downstream 1769329 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1825719 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1825811 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1825887 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2614546 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 81821 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1301376 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3416638 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3522359 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4478786 18939174 ~ 18940464 (-) True G74791

Expression Profile