RNA id: XM_022672169.1


Basic Information

Item Value
RNA id XM_022672169.1
length 1412
RNA type mRNA
GC content 0.46
exon number 8
gene id rccd1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14546797 ~ 14550920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTGACGCCGACAGTTTACTAAATTTAACTTGTCAATTTCAGTGTTATTTCTGCTATACATCAGCAAGTAAGgcctttaaaataaacatatgttGTGTTTTATAAGATAATAAGTCAATGAagtggtttggttttggttttaatGGCTTTGGGCAAATATTTCCCAgagtaaaaagtgaaaatagtGGAGACAGCTCTAAAGTGTTGAGTCCAGCTGCAGTGCTGAGTTTGTGCTCCTGTGGAGAAAAAACAAGCTTCAGCCCCAAAACCAAGAAAACAGAACCAGAGGACCAAAACATCAGGATTACTGCAGCTTGGAGCCGAAAAGCTGCCATCCACATACATGGCGGTAAACACGTGTGTGTATCAGGGCTGAGAGGTGATTCAGAGCAGCAGGATGAGGAGTTCAGAGGGCTGGTTGTGGAGAGTGAAGGGTGTGAGGACGCTCTGATCACTGAGAGGTATCTAATCCTCAGATTTGCTGACAGAGTGGAGTGCTGGAGCCAACTGACGCCTGCTGGAAAAGCTCTGGCCTGGAGCAGGGTGTGGGATAGCCCTGATAATACTGGTGATACTGTAACATTACCACTGGTGCCAGGAGGATACATAGAATCCAAACCTCCGTTCTTCAGACCCCTCTCTACCGAGCTGTGTGCCGTTAGCTTGGCGCTGGGCACTGAACATGCTGTTCTTCTGACAACATCTGGAACTGTCTACACCTGGGGATCTGGCAGTCATGGTCAGCTTGGTCAAGGCAGTGTGGTTTCAGAGGATGAGCCTCGAGCAGTAGAAGCTCTGTGGGGTGTCCCTATGAACCATGTGAGTGCAGGGGGCTGGCACTCGGCATGCATCAGCGCTGGTGGAGACCTCTATATATGGGGCTGGAACGAGAGTGGCCAGATAGGCCTGCCATCAAAAGGTCTTAACGATGAGAGTCAAAAAGGACAAAGCACTGGTAAAGATaaacaaactatgaataaaGGAGAAGATGATATATTCATTTCAATTCAAGCCTTCCCTGCCCTTGTGGATGTTCCGGAAATGTGTGAAATCAGGCAGGTGAGCTGTGGATCCCGCCATACAGCCGCTACCACAAGCACTGGAAATCTGTACACCTGGGGATGGGGTCACTATGGCCAGTTGGGTCATGGCTCAAAATGCAGTTCAGATCAACCCAAAGCCGTGGAGTACTTCTCAAAAAATGGGATGTTTGTAGAAGATGTTGTCTGTGGGCTGTGGAATACATTTGTGTCTGCTGTTCCAAAAGAGCATCGCTTCTCATGACCCCCAAACAAAGGGATCTATTTTCTACTGGAGTCCTTTCAATTGTGATGGACGATCATCAAGACAGCCATAATAAATGTAGGGAAACAACATgcgtttattaaatataaaatatctccaaaaatA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99136 lncRNA upstream 1284 14542198 ~ 14545513 (+) True G73514
TU99072 lncRNA upstream 222174 14323965 ~ 14324623 (+) True G73468
TU99066 lncRNA upstream 277073 14266776 ~ 14269724 (+) False G73464
TU99067 lncRNA upstream 277882 14266776 ~ 14268915 (+) True G73464
TU99068 lncRNA upstream 278441 14266776 ~ 14268356 (+) False G73464
TU99154 lncRNA downstream 63498 14614418 ~ 14619324 (+) True G73529
TU99150 lncRNA downstream 87027 14637947 ~ 14638553 (+) True G73527
TU99158 lncRNA downstream 95523 14646443 ~ 14647562 (+) True G73532
TU99198 lncRNA downstream 124953 14675873 ~ 14676794 (+) True G73566
TU99239 lncRNA downstream 293525 14844445 ~ 14844664 (+) True G73598
XM_022672167.1 mRNA upstream 157476 14238039 ~ 14389321 (+) True ldlrad3
XM_022672166.1 mRNA upstream 385498 14078012 ~ 14161299 (+) True trim44
XM_007228159.3 mRNA upstream 535077 14008632 ~ 14011720 (+) True fjx1
XM_022671916.1 mRNA upstream 718375 13794413 ~ 13828422 (+) True cd44
XM_007228153.3 mRNA upstream 781747 13694428 ~ 13765050 (+) True pdhx
XM_007228167.3 mRNA downstream 5100 14556020 ~ 14562537 (+) True LOC103025904
XM_007228168.3 mRNA downstream 5100 14556020 ~ 14562537 (+) False LOC103025904
XM_007228169.3 mRNA downstream 39683 14590603 ~ 14595936 (+) True LOC103026417
XM_007228171.3 mRNA downstream 47045 14597965 ~ 14605957 (+) False slc25a3
XM_007228170.3 mRNA downstream 47045 14597965 ~ 14605957 (+) True slc25a3
XR_002650241.1 other upstream 1648866 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 1943373 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 4464657 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 5397378 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 7661256 6881587 ~ 6885541 (+) True G71788
TU99159 other downstream 97909 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 340614 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 1735756 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3903931 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 4531896 19082816 ~ 19085556 (+) True G74832

Expression Profile