RNA id: XM_022672170.1


Basic Information

Item Value
RNA id XM_022672170.1
length 3532
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC103040849
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 14566910 ~ 14574221 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTACTCTGTCTCTTTAAATGTCACCAACTCATTTGGAACTAACTGCCTGACCAACCTGACCGGCAAATTCGTCTAACACTGTGTGCTGGTACAGAGCACCTGTAGCGCATGTTAtagcaaaaatgttttatttcctcagaatttatgatttatgatagGGCATTTATGATTTCATCAATGGATCAGGATTATTGTAATTTGGCAAAAAAGGAATCTCTCTTACACTGATCATCAACTATGGTTTACAGCAACCGCTATGGAGTGATTTTTGCCTGCACCTGTGGTGTGATCATGGGCGTGGGATTTGGTGCCAACCTCCTGGTCTTCTCCCTCTTCGCTAAACACAACACCCTGCGCAAGAACCGCCTGGATGCACTCCTCCTCAGTATGACCCTGGCAGATTTTTTCAGCCTGCTCCTGATCCCCTTTACCCTGCACTCTGCTGTCAGCTTCTCCTGGCCACTGGGCGACACGTCCTGCAAAATCTACCAGTTCCTGCTGGCTTTCTCCCTGGCTGCCAGCACCTACTCACTGTGTGCAGTCTCGATGGCACGGTTCATGATCATCACCAACCCATACCAGCCTCCTTCCACAGACCTGGTTGTGCTGATGCTCGTCATGGCCTGGGCTTTGAGCTTCTTCATCAGTCTGCCCTTGCGCATTTTTGCCACTAAGGAGAGCCTGGTGCCAGGTTTGACCAACTATACCTTCTGCCTGCCCACCATCCAGGAGCACCACTACCAAGTGGTACTAAGCCAGTTTGTGCTCTACTACTTTATACCAATGATGGTAATTGCTGTCAACTATGTACGCCTGGCTCTGTTCCTACACAAAAGCCCTGTGATGTCCACAGCCAGTGCCAGGAACACACGCAGAGCTTCCCTCATGGTGTTCCTTGCTGCTGGGACCTTCACTGTGTGCTGGCTGCCAGGTTACATCCTGGAGCTGTGTGTATATCTGGGCCTCTACATGCATGGCCAGTCCTGGGAGATGTTCTACTTCACCTGCACTGTGCTTCAGTACCTGCATCCCTGTGTTAACCCCGTTCTGTATGTGCTGCTATCCAAGCGCTACCGGAGCCAACCAGGAGTCTGGCTGTTTCACTGTAACCGTAACAAGGTGCACCCTCAGATCATCAGTGTGACTGAGAGCTTCTGATACTGAAAAACATGAGTACTCATGGCTATCTGAAGATTTTTAAAGAAGAAGCTtgaaataatgttttgtttttccatttaatttattaataatgctGATGTTGGTTTAAGAAAACTGATGTTGGCtgggtttcccaaaagcttCCTTTTACAAAGATAATAGGAAAATTGGCACCATAATGAACGCTCTCTACCAGTTAGGATAATCTTAATCTTAACACTAAGGTGCATTTGGAAAACTGAGCCCTGGTCTagaatttttatattatgtggGTATTTGTTTGGACTGcactgtatgtttttctttcacTGTACgttttcttctttacaaaaaacacaaaatgctaatgcttaacAAAACTATTTATAAAAGTCCCAAATacaactcaaacaaaccccaATCCATCATGGGCCACTCCatacttttaaattgtaaaattacagtacaaATTACGCTGTTCCTTTAATCTTTCTCCTTAAACTGCCTATGATTCTACATTGAGCTGTTCTTCCACTGACtgaacacacacccacacacacacacagtaatttacacagtcatacatacatacaagtgCACTGTGTTAAGCAGCTCTTGCACAAAACATGTGTACTCCcattttgacataatgtgaaacATAATGGCAgttgttttttaacattgtgtATCATGTTGAAtgaaccaataaaaatgctcaaaaatatcTTGGAATAAAAACTATTTACACTGACTTGCATTGAAAGATAAGATGTTAAAAAATGGACCCCCCATTGCCACTCCTGGAGTAGACTGATGAGTGGATTTGGACTGGAACAGGGACTGGGATGTGGCAGGACTGAACAAAGGGCTAGGTTGTGGGTGGATTACCCATTTCCACTTCTGACATGGCCCAGACCGGGGTGACCGGGACTGGTGAAAGGACTGGGTTGGGGGCTTGGACAATTATGGTAACAGGGACTGGGAGAAAAACTAGTGCCCAGAGAGTGATGGGGATTGGGAAAGGGATTGTGATGGGGGCTCGAATAGTGACAGAGACTGGTTGAGGGACTAGGATGGGGGCTTGGATTGTGACATGGTAAAAGCCATGGCTCTTCCTCTAACAGGACTAAGCTATTGACTGTGAAAAAATGACTTGAATTCTCTCCTCTGCACCGGCTCCactcttttaattaattttgatcttgatactgtataaaacatgtacctttgtcctgttttttttctttcattttgcaGACAAACAAAAATTCTGTATTAGCTGCAACAATCTGTGTAATTTGACCCAATTCGGGAAGTCCTGAGCATGAGCCAATACAGAGAATTAAGAATCATATCTGTGTTTTACTTAACTCCTTTGATGCAAACAGATGATACCAGTATAACTGACCCAGGCTTGCTTATTTGTTGAGATACCTTTTTCTGAACCTCAGTAGGAAAAAGGGGGAACAAAACTATTGCAACCTTTGTCATCTCAAATTATGGCTTCAAAAAATACTTTGATAAGTAATATATGATTGCCGTCTGGTGTTTGGTGGCAAGGGTAATGGCCACCCACCTGGTGATCTACAGGACTTAAAAGCGAACACTTAGTATCAAATACTGCAGAAGACCTGCCTGTGTCATGTGATGCACATTGGGGTCACTTAAATCTGGTTTTAAGCTACTTCTGTAGGAGTATATTCAATACAGTAAAGTAGAATGCTTATTTAGTGTAGTAATAATTTTACCTCTGGAGGCTCTGAAGTCTGACCCGTACCCGTTAAGGTCTCTGCCCATGAGTGAGCAGCAATGGTTTCCCACTATCATTCTGTCTGGGTTCAGCATGGGTACCAGCTTAAACACAAACTTGTCCATGAGCAGGGCTGGGTCAGGCAACACATCTAGCAAGAAGTCCAGAAAATGTTACATTATGCTTGCTTAAGatattaagattttttatttaactttgtcTTTTGAAGATCAGTTAAACTGCTTAATACCAGTTCCCAAACATTTGCATGTAACTGTACATAACTAACTTTTGAAGCTTTGCCTATTGCACAGCTACACTGATGTCGCTTACTGCAACGTTACAATGTTCACTTCACCCTGTAACATCATGTGCAAAAAGCTGCTTTTCTAATCAGCCTGTACTGTTATCCTACAATGCAAATACAaacttcagtattcagtatctccTCAACTGCTTTGCACAGTCATAACAAAGCACATTTTTCTTACACTTGGTGTGCTTGCAGAAGATTGCCACTCGTCCTTCAAACTGCAACATAGTGTCTTCAGGCCCAGACAGGGAGACTGAGGCCTGGCTTGGAAAGGACAGCCTGTCCTTAATTCGAGACCCTGAGAAATAATGCTCTTGACctgacacataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99124 lncRNA downstream 98769 14467622 ~ 14468141 (-) True G73509
TU99102 lncRNA downstream 289804 14276679 ~ 14277106 (-) True G73491
TU99032 lncRNA downstream 494872 14070499 ~ 14072038 (-) True G73434
TU99030 lncRNA downstream 528542 14038069 ~ 14038368 (-) True G73432
TU99027 lncRNA downstream 559761 14006752 ~ 14007149 (-) True G73429
TU99167 lncRNA upstream 23730 14597951 ~ 14605960 (-) False G73540
TU99170 lncRNA upstream 24233 14598454 ~ 14605960 (-) True G73540
TU99251 lncRNA upstream 101660 14675881 ~ 14676858 (-) True G73606
TU99248 lncRNA upstream 134840 14709061 ~ 14797283 (-) False hbp1
TU99266 lncRNA upstream 170949 14745170 ~ 14748658 (-) True G73617
XM_007228164.3 mRNA downstream 11955 14550872 ~ 14554955 (-) True cib1
XM_007228165.2 mRNA downstream 21374 14542196 ~ 14545536 (-) True LOC103025073
XM_022672168.1 mRNA downstream 106522 14390685 ~ 14460388 (-) True LOC103024229
XM_022672165.1 mRNA downstream 602884 13920173 ~ 13964026 (-) False pamr1
XM_015601131.2 mRNA downstream 602884 13920173 ~ 13964026 (-) True pamr1
XM_007228304.2 mRNA upstream 574 14574795 ~ 14578518 (-) True LOC103041151
XM_007228175.2 mRNA upstream 40170 14614391 ~ 14619388 (-) False LOC103028140
XM_007228176.3 mRNA upstream 40170 14614391 ~ 14619171 (-) True LOC103028140
XM_007228172.3 mRNA upstream 65780 14640001 ~ 14649251 (-) True gpr22
XM_022671917.1 mRNA upstream 113468 14687689 ~ 14690107 (-) True LOC111193055
TU99163 other downstream 21472 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 1945554 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2001944 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2002036 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2002112 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 1187543 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3302805 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 3408526 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4364953 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 4496717 19070938 ~ 19072888 (-) True G74838

Expression Profile