RNA id: XM_022672180.1


Basic Information

Item Value
RNA id XM_022672180.1
length 2497
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC103035545
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15001175 ~ 15074769 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttgttgatgtttttcttcttctacttcttctttgTTTATGTTTCTTTCACCTATAATGTCTTGCtggccttttatttatttttatgatataAAACCAAATGTAGGCCAAGATTTGACAAACTGaatcactcatttttttttagatatgttgtgttttattactCAGTTATTATTTTACGACATTAACGTGTTTCATGTACTCCATTGCATCTCTCTACGTTTGAACAggttaaaatatactgtatttattagagCTGCCTGGAGAGCAGCCGGAGCGCGCGCTCTGACTGAGGCTGTGCTGTAGAGCGCGAGTCACTCTCTGTCTGAGTGTGTGACTGATTAAGGAGCTCGGCCGGAGCAGCAGAGGACGCAGGAGAGCTGATCCCGctgtggagagaaagagaccgAGCTGGGGCTGGACaggcaggagtgtgtgtgtgtgtggtgagcaTGGCTTCCTCCACGACGGAGCAGGAGCTGGGGCTGGAGCAGGAGCTGAAGGTGGTTCTGGAGGTGGTTGGTGCAGAAGACGGGGTGAAGCAACAGTCAGGCCAGGGGAGATTGCAGGAAGAGGTTGGAGAAGAGTGTAGAGCTGCTGAGGCTGAAGCTGAGGCAACACTTCCGGTCTCAGgtgcCAGTTTTCCCCACCAGCAAGAACCAGTCTGGACTGACAAAAAAGAGGAGTGTCTGAACTGCCAGTGCCCATCAGTTCCTACAGAGACCTCAGACCTTCAGCAGCTTTCAGACCAAACAGCACCACCCGTTGTGGAGCTCTCTAGCCCAACACAAATACAAGACTGCCCACACCACCTGTGTCCTGATCAAGAAACCTCAGAAGGAGGCCAATATGTCCCTTTAGATGTTCCAGAACATGACGAAACGGAGGATAGATCCAATTTGATTGGACCTAACCAGGAACAAGAAGTGAAACAAGCTCACCTGGAGGCTTTAGAAAGGGACCAAGATCCAGAACCAAAGCAAGAGAACCAGGAGAACCCAATAAACATGTCAGACTCAGAGAAGAATGAGAACCAAGAGAGTCAAGTGTCTGAGCATTGTGACTGGGAGGGAGCTGTCCCAATTGTGATGGTCACTAATCTAGAGGAGATTCCAGTGTCAGTGAGCGACAACAAATCCTACTGTACAGATGATCGTTATACAATGTGGCAGCAGGTGTCAGCAGAGAGGCAGGCAGAGGACGAGGCGGAATCCGAAAAGCAGGAGGGCACCGTGCCCGCTGATGTCAGCCCCTCTGCCAGTCCCAGTGACGTCACGGAGTTCAGCAGCGGTGACTTGCAGTTCCTGAAGAGCGACAGTGTGTCTCTCTGCAGTGAAACAACCATCTCTGgcaagAGTGATGAACAAGAAGGGCCTGAAGAAGACACCAGGAGTGTAGCCGCGTCCTCTGTCATGGAAGGCCCTGAGGAAGACACCAGGAGTGTTACAGCATCCTCTGTCATGTCTCTGTTCCAGAGGATGCAGATGGACCCTCTGGAGCGGGAATGGTTACGGTGTGCTGCATTAGGAAATGCTCCTGGCCTGCGCCAGCTTCTGCTCCAGGACCCCTCCCTGGCCCCCAAAAAGGGGacgGCTCTCCACTGGGCAGCCAAGCAGGGCCGCATAGAGACGGTGGACATGATGGCTCGCTCTGGCGCAGACGTCAACCAGAGAGCGCACGGATACACAGCACTTCACCTGGCATCTCTGCATGGACACGCCCACATCATTCAGCTTCTGATTAATAACTACAATGCTAAAGTGAACATTAGGGACTACCACGGCAAGATGGCCGCTCATTACTGGAATGGAAGCATGGACGTTTTCAACATGGGTGGCTCTCAATCAGGTGGGAAGTGGTCGAGAGGGAGGCGTGGACAGCGCTATGGACAGTTATCAGCTCTTCTTTCTCGTTCGCGGAGTCAGGGAAACCTCAATGTGGAGCTGATCCCTGGCTCTCTGGAGTTAACCCCTCGTCTTCTGCCTCGCTCTGAAACCAACATTCCGACCCTCATGGATACGTTCTGAATGGAGTTTTTGAGTTTCTACAGTCTGTATGTAAATACGAGTGAAAGATAGTGTCAATTAGAAACACCATCTTTCTGTCTCCTCTCATCTGTTGTCTTATGAAGTGAAGAAGATGCCATGCTATTGATCATGTTGAAGGTTTTTATTTAGACATATTATTATTGACACAATGCAGTCAGTACTGTCAGTCAGTTTGccttctcttattctcttatgcATTTTAACCCAAAAGTGCAGACCCTTTCAAAGCTGTGTGAAGTTCCTTACAGCAagcttttcttcattttaacgCATGCAgtccttaaaggagaactccagtgtaaaatggacctTTGGTGTAGTAAAccatgataaaagtacttacctttgataaatAGCAAACTTCGGTTCTCCCagagctttctgagatccagaaattttaccagtttgtccaaacacccttcagactgggtgacacaatttaaaaagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99364 lncRNA downstream 90495 14909107 ~ 14910680 (-) True G73679
TU99359 lncRNA downstream 96355 14902388 ~ 14904820 (-) True G73675
TU99358 lncRNA downstream 98882 14900668 ~ 14902293 (-) True G73674
TU99357 lncRNA downstream 99710 14900668 ~ 14901465 (-) False G73674
TU99350 lncRNA downstream 107311 14891472 ~ 14893864 (-) True G73671
TU99392 lncRNA upstream 6288 15081057 ~ 15081299 (-) True G73694
TU99395 lncRNA upstream 10725 15085494 ~ 15085724 (-) True G73697
XR_002650245.1 lncRNA upstream 11011 15085780 ~ 15111364 (-) False LOC103036159
XR_002650244.1 lncRNA upstream 11011 15085780 ~ 15111364 (-) False LOC103036159
XR_002650243.1 lncRNA upstream 11011 15085780 ~ 15111364 (-) True LOC103036159
XM_007228201.3 mRNA downstream 33874 14964498 ~ 14967301 (-) True irx3
XM_007228197.3 mRNA downstream 111420 14868932 ~ 14889755 (-) False rbl2
XM_007228196.3 mRNA downstream 111420 14868932 ~ 14889755 (-) True rbl2
XM_022672177.1 mRNA downstream 117649 14868932 ~ 14883526 (-) False rbl2
XM_022672176.1 mRNA downstream 143579 14849582 ~ 14857596 (-) False LOC103033621
XM_022672181.1 mRNA upstream 49045 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 49045 15123814 ~ 15213323 (-) True LOC103037068
XM_007228214.3 mRNA upstream 153270 15228039 ~ 15290712 (-) True LOC103038669
XM_022672184.1 mRNA upstream 153270 15228039 ~ 15290711 (-) False LOC103038669
XM_022672182.1 mRNA upstream 153270 15228039 ~ 15290711 (-) False LOC103038669
TU99163 other downstream 455737 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2379819 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2436209 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2436301 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2436377 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 686995 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2802257 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2907978 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3864405 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3996169 19070938 ~ 19072888 (-) True G74838

Expression Profile