RNA id: XM_022672209.1


Basic Information

Item Value
RNA id XM_022672209.1
length 3426
RNA type mRNA
GC content 0.45
exon number 15
gene id ice2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16966782 ~ 16988490 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGAGCGCCCTCTGATGGTGGAAGAGACACAGGTGAGGTTCTGAAAGTGGGTGTTCTCCTCTCTATTAGAGACTCTCTGTTTGTAGCAGCATGAGGACAGTAGTGGATGTTGGAGCTACTCTGTCAGTTAACCTAGATGCACTATAAAGTCTGAATAAAATCAGTCATGGAGCTGAAATGGGATGATGGTCCAGTCAGTGAACCCGTCCTGTTTTCCAAAGACATCTTTGACAAATACTCACTGGCACCCACAGTACAAGAGCTGTGGGCCTTGTTACAGAGTCCTGACGTGAAAGAAGAAAATACGAGTAGGCCTGTTGGTACCTCCTCGCCACCAAAGCTGACCAAAAGCAATACAGTTGCACCAAAAaccagcagcagaaacagccaTGGCTCGGTTGGCTCTGCTTCAGACCGCAGCGACACTGTTACTGATAGCAAGAATAATCTCACTGATGCTGATTGTAAGGAACCTAAAGGATTCCCTGAACCAGAAGTACCTTATCCCTGCTACACAGCCCTCAGCATCAAACAACGAATAGAATATCTGAACTCAATTAAGAACAAAAAGCATCTCACAACTCCACAAAACATAATGCAGACTGTGCAGATGGAAATTGCAGAGTTCATGAAGTATGTGCAGGATGTCTCCAAATTTCGTGCTGATAAGTACAAATACGTGCCTCTGGGAGCCACTCGCTATTTAGAGGAATATTTTAAAGCCAGCATGGAGTATATAAAATACTATCCGCAGCATTACAGTATCCAGGAAATCACCAGCTTGACTGGAGGGAAATTTATCCCAGACATTTCCCTCAACTTTGAGAAACAACTGCTTGCAATGgGTAGTGTAGACATGTTAGAAAAATGGATCGTGCCAGGAAAACCACAGCTCTCCGTGGATTATGACTCTGTTTCAGCTGTGATTCCTCCGTCGACAAAGGCCAGACATTTTCACAAGGCAATCAGCAGTGACACAAATGCAGAGAAACTCAGTGCTATCTATGAGCCTCATGTGTGTCTAGCAAAGGAAGCCTTCATTCAGCTCCTTAATAACAGTTCTGAGCATTCTGAGCCATGGGAGCTGCCAGTCTGGGTGAAGGAGAAGTCTGGAAAAGGTAGCACTCTAAGTAAAACAGTGTACATCGATCCTCCTCTGCTGAAGACACAGATgacctggagagagagaaatcatcTGTTTCATGAGGAGAGTATAAAACTGGCCTACAAGAAGACAGCCTCAAATCCTGTGTTTTTTCTCGAAACAGAGGACTTTGCCAGTAAAGTAGACTTTGTCCCAGAGGCAAAGAGTAACTCAAGAGCGGTTGTTTCATTTGATGAGACCGGCATCGATTTTGAGGTCGATGTTACAGAACTGGAGTCATTTGGAGAGTCCAGCCAACTTAGTAAGAATGTAAAGGAAGAGGATAAACCAGAAGACCACtttaaacatgaaacactgcCATTATCTAAACCTAAATCAGGCTCAGATAAAACCAGCGAAGTACTCACTAAAGTGGCTTCCACACTAAAAGCCATTTCTCCACCACTCTCCACACCATCAAAGGAAAAACTGCAAGAAGAAACAGTCAGTACTGATGTAGAGGACAGCTCAGTGGACAAGAGATCTGGGGACATTCTATCAGAAGACCAAATGAGTAATAGTTCCACTGTAGAAGAGTCTCCCAGTGCAGACTGTCCACCAAGCAAGCGGATAAAGCACAGCTCAGCAAGCAGTCCAGACCACACTATGGATTCTGACGAGGAACGTCTTGTTATTGATCACTTTGGCTCCCCATTAAAAAACCAAGCAGAGAAAACGAAGACAATTCAAGCTACACCAGAGAACACCACTGAAACCACACTGTCctcattaaacaaacaaacctcAGATTCCACAGTGCTTCCTAGCACCACCAGCCCTGCTAAAGGAAGTAAGAAAGGAGTTAAAAGGTCCAGAGTCTCTGAGGAAGGTGACCAGCTTGGTCAGATCTTGAGAATGCAGAATGCCATGCTGAAATCTAAAGTGGGCAAAGGCCAGGAGACTCCAAAACCACACCCGGAGTGTAGACCTCCCGAGCCCAGGGTGAGCATCCACCATCAGCCTCTGGTTAAACCCTGTGTCTCCTCCTACTTGGACTCTAAAGAAGGTCTGGTTGAAGAGGCTGTAGCTCCTGCTGTCGCTCAGTCCCCACCACGcaagaaaaGGCTGCTGAAAGAGGAGCTGAGGGTGAGTGCGGAGGACGAGCAGGACTACGAGGCTCCGACAGAGGCCAGTGTGTTCTATAAACTCTACAGCCTAATGGATGTGCTGCTGATCGTGCGCAGCACTGTGGACATCGCCCACCCCAGACATGATCAGGACACCTTTAGGGCTGTTCCAGTGCACGTGCTGCCTAAGCTGGAGTACCAGTTGTGTTACGGAGCTGAACTCCTGACCCACACTGAGGTGTGTCGTCTGTGGGCCGAGCAGCTCCTACACACCAGCACTGCCTCCTTCATAGgtcgCATCAATGCACACACATCAAAGGTagcagagctgcaggagctcCCAGCTGATTGGATCCAGAACACTTCCTGTAATTTTAAGCCGGCTAGATGCTTGAATACGCTTCACCACATTCTGAAAAAAGTCACAAGCTTACCGGAGGGGAGGTACCTGTTGGTCCATAAACCCGGTGAAGCGTTCGTGTCCATCTTCAAAGCCAATGATGGAAATAAAACTAGTCGTAGCATCTATGATCTTCAGGCAGTGCACTGTGGCCCCCCTGTCCCTCTGGAGGCCAAGGTGCCCTGGGTTCCTTTAGACCCTTTTCATATACTGCCATTCCACCAGAAATACAAAAGACCACCTTGCACATTTCCACCCTGTCCATATCAAGGAAAAAAGCTGGCAGGAGGGAACAAAGGAGCAAAGCATGCTAACACTCCAAATAATCCACCACGAGGAACTCAGCAGTTTGCAGCCGTGCCCGGGCAAAATcacaagaagaaaaagaacaagaaaaaaaacaaaccaaacaaatggaCAGAGAAGATGAAGAACaaacagaagaaagaaatacagataaaaaaagaagagcagTGAGCAGGGATAGGACTAGGACTCTTGTCTTGAATATGTAGGCAGAACTCAGTGGCGTCAGGAGGTGCTTACGTTAGAGTGGGTCTAATCAGGGAAGGATCGAGGTAGATTATTATTTGAGAAGCTTAGGTTTGAGGACGAGGAGTTTTCCTGAACTGATTTATGTAAGTAAATTCCACGCaaacagtataatttatttttcttatttttttttttgaaaatcctTCTTCAAAGTTAAAAGTTTTGAAATGTATGCAAGCTAGTTGACCTTTGTAATGTTTTGTATTCTTActtttatttgtataataagaatgaataaattagttattgatataaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100220 lncRNA downstream 165731 16797045 ~ 16801051 (-) True G74368
TU100143 lncRNA downstream 180743 16770442 ~ 16786039 (-) True G74306
TU100126 lncRNA downstream 219260 16743060 ~ 16747522 (-) True G74295
TU100117 lncRNA downstream 276425 16659503 ~ 16690357 (-) True G74286
TU100116 lncRNA downstream 325126 16640842 ~ 16641656 (-) True G74285
TU100263 lncRNA upstream 266427 17254917 ~ 17255289 (-) True G74407
TU100308 lncRNA upstream 816845 17805335 ~ 17813965 (-) True G74447
TU100451 lncRNA upstream 856636 17845126 ~ 17862741 (-) True G74556
TU100453 lncRNA upstream 868823 17857313 ~ 17866138 (-) False G74556
TU100508 lncRNA upstream 1229799 18218289 ~ 18227676 (-) True G74599
XM_007246492.3 mRNA downstream 1222 16958574 ~ 16965560 (-) True LOC103044821
XM_007246489.3 mRNA downstream 136801 16814916 ~ 16829981 (-) True bnip2
XM_022672207.1 mRNA downstream 136801 16817642 ~ 16829981 (-) False bnip2
XM_007246490.3 mRNA downstream 136802 16814916 ~ 16829980 (-) False bnip2
XM_007246487.3 mRNA downstream 228117 16618151 ~ 16738665 (-) True otud7a
XM_007246493.3 mRNA upstream 4421 16992911 ~ 17425461 (-) True LOC103045127
XM_022672210.1 mRNA upstream 4421 16992911 ~ 17087007 (-) False LOC103045127
XM_022672211.1 mRNA upstream 599538 17588028 ~ 17600473 (-) True LOC103045440
XM_007246494.3 mRNA upstream 599538 17588028 ~ 17590144 (-) False LOC103045440
XM_007246510.3 mRNA upstream 890240 17878730 ~ 17885395 (-) True nrg4
XR_002650248.1 other downstream 1188359 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 2421344 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 4345426 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 4401816 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 888536 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 994257 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 1950684 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2082448 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 2871204 19859694 ~ 19865982 (-) True G75100

Expression Profile