RNA id: XM_022672229.1


Basic Information

Item Value
RNA id XM_022672229.1
length 7952
RNA type mRNA
GC content 0.49
exon number 30
gene id LOC103025779
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18228352 ~ 18375654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCAGCTGTGAACTATGCACTTTCCGTTCTTTGGCAAGTTTGTGGACAGAACTGTAGAAGAGGTTTTAGGTTTAAGACTCGGAGGAAAGATGTTCGGAAGTGGCACGAGAAAGTGGTTTGTCAGGAAGAACAAGAAGCAGAAGAACGGAGCCAGGAAGGGAGTAAGCAGGAAGAAGGGGAAATGGGTCGCCACGGTTCTGAAGCAGCACAGAGAGATGATGCTGAACGAGCTGGACGTGAACAAGGTGCTGCCGTACCTGGTGTACGACAAGGTCTTCTCTCTGGGGGAATATAAGGAGATCCTGGGTCAGGAGAGCAGCAAGAAGAGGGCAGAGCTTTTTCTGGACCGGCTGGCACAGAAGGGCCCGGGTGCATTCTGCTCCTTCTGCTCTGTGCTGGAGGAAGTGTGCCCTCACCTGCTCACCTGCTTCCTGCTGGACTCtgaAGATGGCTCAGGCGGACGAAGTAAGAAGCAGGGACAGACTCAGCCTCCCCACAGCCAGGAAGATGTCCCGTCCAAAAGACAGGACACAGTTGGCTCTTCAGCCATGTACACGGATCCTCTGTTTAATACACGGATTTTCCCCAAACACGAAAAAGATAAATACGGGCCAGCTGTGTATTATCCAAGAGTCCACGGCTTCATCCCCACTCCTGATACAATCTCTGTGGTGGCAGAATCAGAAAGCTCCGTTCAAGGCAAGCCATCTCTGCGTAGAATCAAGGGCCGAATCCATCGCAGCAAAAGCCTGGACAGCATCGACCTGCTGGACTCCAATAGTGCAGCAATGGAGGAGACAGTAATATGGGAACAGCACACAGTAACTCTACACAGGGCGCCAGGTTTTGGATTTGGAATTGCCATCTCAGGCGGCAGGGATAACCCCCATTTCCAGAGCGGAGAGACGTCTATTGTCATCTCTGATGTGCTGAAGGGAGGACCAGCAGAGGGCCTGCTGCAGGAGAATGACAGAGTTGTGATGGTCAACGCAGTCTCCATGGATAATGTGGAGCATGCATATGCAGTGCAGCAGCTTCGGAAAAGTGGGAAGAATGCAAAAATAACCATCAGACGTAAGAGGAAGGTGCAGATTCCCATGGGGCGtcacggagagagagaaactatGTCTGAGCACGATGAAGACGATGACAGCTATGAGGACGAGATCTATGAAGTACGAAGTGGAAGGAGCGGACCCAGTGCGTATAGCGGTGGTGGAGCTACAGGCCGGCGGAGCGGCAGAGGAGAGCGGCTGGGCGGGAGGAGGGAGCGGGACAGAGAGCGTAGCGGCTCCAGAGAGAGGAGTCTGTCTCCACGCTCGGACCGCCACTCTGTGTCCTCTAACCTGCCTCCACGCCCAGCCAAGGTCACGCTCGTCAAGTCCCGCAAGAATGAAGCAGAATATGGCCTTCGCCTGGCCAGCCACATCTTCGTGAAGGATATCTCCCCTGAGAGTCTGGCCGCCAGGGACGGCAACATCCAGGAAGGAGACGTGGTGCTGAAGATAAATGGCACAGTGACAGAGAACCTGTCGCTGATAGATGCCAAGAAGTTGATTGAGAGATCGAAGGGCAAACTGAAGATGGTAGTGCAGAGGGACGAGAGAGCCACATTGCTGAACATCCCTGACCTCGACGACAGCATCCCCTCAGCCAACGCTTCTGACAGAGATGATATTTCAGATATCCACTCTGTAgcatctgatcactcaaaccgaTCCCACGACAGGAAGAGGAGCAGTCGCTCTCGCTCCCCAGACCGTCGCTCAGAGCCCTCAGACCATTCCAGACATTCCCCTCCACAAATCAGCAATGGCAGTCATAGGAGTCGTGATGAGGAGCGCATCTCGAAGCCGCTCCCCGTGCCTGCTAAGATGGTGGAGGAAACGCCTAAAGCACTGGAGCAGGCTGGGACAAGAGAGGAGAAACAGCTCCCCCCTCTGCCAGAGCCTAAGCCTGTGTACGCCCAGCCTGGCCAGCCTGATGTGGACTTGCCCGTTAGTCCAGCTGATGCTCCTGTGCCTAGTGTAGCACACGACGACAGTATTCTGCGGCCCAGTATGAAGTTGGTGAAGTTTAAGAAGGGTGAGAGTGTTGGTCTGCGGCTAGCTGGGGGCAATGATGTGGGCATCTTCGTGGCTGGTGTACTAGAGGACAGTCCTGCTGCTAAAGAGGGTCTGGAGGAGGGAGACCAGATACTCAGGGTAAATAATGTTGACTTTGCAAATATCATCCGAGAGGAAGCTGTGCTCTTTCTGCTGGACCTGCCCAAGGGGGAGGAGGTCACCATTCTGGCTCAGAAaaagaaggatgTGTATCGTCGGATTGTGGAGTCGGACGTTGGTGACTCGTTTTACATCAGAACTCATTTTGAGTATGAAAAGGAGTCTCCATACGGTCTGAGCTTTAATAAGGGTGAGGTGTTCAGAGTGGTGGATACACTGTACAATGGCAAACTGGGCTCCTGGTTGGCAATCCGTATCGGCAAGAACCATCAGGAGGTGGAAAGAGGCATCATTCCCAACAAAAACAGagCGGAGCAGTTATCTAGTGTGCAGTACACTCTTCCTAAAACAGCAGGAGGCGACAGGGCAGATTTCTGGAGGTTTCGTGGTCTGCGGAGCTCTAAGAGGAATCTGAGGAAAAGCAGAGAGGACCTCTCCGCACAGCCTGTGCAAACCAAATTCCCTGCTTATGAGAGAGTGGTACTGAGAGAAGCTGGTTTCCTGAGACCAGTGGTAATATTCGGTCCAATTGCTGACGTTGCACGAGAGAAACTTTCTAGGGAGGAGCCAGACCTCTTTGAACTTGCAAAGAGCGAGCCTAGAGACGCTGGCACAGACCAGCGCAGTTCTGGAATCATTCGCCTCCATACCATTAAACAGATCATTGACAGAGATAAGCATGCCGTGTTGGACATCACCCCTAATGCTGTGGACCGTCTGAACTATGCCCAGTGGTACCCCATCGTGGTATTCCTGAACCCAGACAGCAAACAGGGCGTGAAGAACATGCGAACCAGGCTCTGCTCTGAGTCCAGGAAGAGTGCCAGGAAACTGTATGAGCGTGCGCTGAAACTGAGAAAGAACAACCACCACCTCTTCACCACCACCATTAACCTAAATAACATGAATGACGGGTGGTATGGCGCTCTAAAAGAGACCATCCAACAACAGCAGAACCAGCTGGTCTGGGTTTCTGAGGGCAAGGCTGATGGAGCTCCAGAAGATGACTTGGACATCCATGATGACCGCCTCTCCTACCTCTCAGCACCAGGCAGCGAGTATAGCATGTACAGCACTGACAGCCGCCACACGTCTGATTATGAAGACACGGACACAGAAGGAGGCGCTTATACAGACCAGGAACTGGATGAGACTCTGAATGATGAAGTTGGCTTACCCAGCGAGCCTGCGATCACCCGATCATCAGAGCCTGTAAGAGAGGACCCACCTGTCATCCAGGATGCTCCCGGGTACCCCAGCTACCAGCACGCTGTGCCCCAGCCTGAGCCCGTGAACCGCATCGACCCTGCTGGATTTAAAATGCCCGCTCCCCAGCAGATGTATAAGAAGGATCTGTACAGTGTAGACGAGCCTGTGCGCGTAAACCACGGGATGAAGCCTCAGCAGCAGCCACAGCAACAGCAGCCTATAGCTCCCCCAACCTCTCTGTCCTACAGCCACCAGCCTGTCTACCAGGACAAACAGCCATACCGCGAGTACGACCACCCGCCTTACGGCTACGACGGTGGCGGCTACGCTCAACCAAAGCCTCATAACTACGACCCACACCTGCACTACGACAACCGTGTGCCTCACTATGACGAGCAGTGGCCCCAATATGACCAGCAGACCTCGTCCCAGCCCCCACCCCCTGGGCCTGGCTACACTCAGGGCCACCAgccaccacctcctcctcctccagtgGGTTACGATCCTCGCTCCCCCTATGAGGATGGCCCCACGAGGGACTATAGTCCTCCTCAGCCCCGTTACGATGAGGCTCCTGTGGGTTACGATAACAGGCCGCGGCACGTCAAGCCTGTTGTGCCCGTTCGCTACGATGAgccgcctcctcctcccccaGTTACATATGATGCCCGCTCTCCTTATGAACCAGAGCCCCACACTTTCCCTATCAATGCCCCACGCTCGCCCGACCCTCCAAAACAGTATTATGGTGATGCTTCAATGAGACCCTCGTATAATCCGGGGCCTCAGAATCGAGGCTACAAACCAGGGCAGCATGAACCTTTGAATTCAGAGCCTCCAGTTCCACCTCCTAAGCCAGAAGTGTTGCTGTCCCCAGGGGAACCTGTCCATTCTGCAGCTTCGAAACCTCTGCCCCCTCCTCCCAGAGAAGACCCAGAGGAGGATCCTGCAATGAAGCCCCAGTCTGTTCTCAACAGGGTCAAGATGTTTGAGAATAAGCGCTCTGTGTCTGTAGACAGAGCCAAAGAGGCTGGAGATCTGCCAGGAATGAGGCCCACAGACCTCCCCAAGCCTGTGAATGCACCAGGGCCTGTGCTTAAAGCCAACTCTCTCAGCAACCTAGAACAAGAAAAGCCGGCATATAGaGCACCTGAGCCACAGAAGCCCCAGTCTCGGTTAGGAGAGGAAGTCGTCCGCTCCAACCACTATGATGCCGATGAGGATGAAGAGTACTACAGGAAGCAGCTGTCCTACTTTGATCGTCGCAGCTTTGACAACAAGGCAATAACTCAGCCTGGAGTCAATCGCTTTCATGATCTGGCTAAACCATCACAGCTTCAGTTAGGATACCCTTTCAACAGGACAGAATCGGCTGAGAAGGTGAGCCCTGTGGATAAGAGATATGAGCCTCTACCCCCGATTAACCATTCAGCGGCTCCTTATGGACAGTCAGGTCCTCCTGTTCCCCCCACATCTCTGCCCAAACTCAGCAACACTGAGGTGAACTCCATACCTGATCCCCACAACTCTCCCAAAGGCAAACCGGACCTGTCTACTCTCCGACCCCCAACCCGAGATGACCCGGTTCAAGGCAACTACCTTTCCCAGAAATCCCCGGTTAACGGCACTGACATTCCCCCCAAAACTCTGGGTGCCCCTGCTCCCACTAGCTATAACCGCTATGTCCCGAAGCCTTACACAAGCTCTGCACGACCATTTGAGCGCAAGTTTGAGAGCCCGAAATTCAACCACAACCTGCTGCCCAATGACACACAGGCCAAGCCCACTATAGTGAACAACAACCCCAAAACTCACCTCTCACCTCAGCCTCTGGAGTCAGACAGTGGAGTGGACACGTTTACTCGTACGATGGACAACAGGCCCAAATATCAGCACAACAACGTCAATGCTATCCCCAAGGCTATCCCTGTCAGCCCCAGTGCTCTGGATGATGATGACGACGATGAAGGACACACAGTGGTTGCCACAGCTCGGGGCATCTTTAACTGTAATGGCGGGGTGTTGAGCTCCATAGAGACAGGGGTGAGCATCATCATTCCCCAAGGGGCCATTCCTGAAAGCGTGGAGCAGGAGATCTACTTTAAAGTGTGCAGGGACAACAGCATCCTGCCACCGCTGGATAAAGAGAAAGGTGAAACTCTGCTCAGTCCCCTGGTCATGTGTGGGCCTCATGGTCTGAAGTTTCTGAAGCCAGTGGAGCTGCGCCTACCACACTGTGCGTCTATGACTCCTGATGGTTGGTCTTTTGCTCTAAAATCCTCCGACTCCTCGTCGGGTGACCCCAAATGCTGGCAAAACAAATCTCTCCCAGGGGACCCCAATTACCTGGTGGGCGCTAACTGTGTGTCCGTGCTGATTGACCACTTCTGAAGAGGACAACAGCTGGTCTGTTATCAAATGTGAAAGCGTCAGTGAAGAAGAACACGAGAAAGACTCCTCTCTTCCCCTTCATCCCTGCTCTGTTACTTCCTGGGGATTTGCTCCACTCTATGAaggagtctttttttttgtttgttttttggtccTCTTCTTTTTTGCAGAGGGAGTTTATTGTGCCCAAGAATATGCTCAGAGGACAAGGAGAGCACCCCCCCTGGTGCTGAATCCCTGCAAAACCCCCTCCTCCtactcctcttcttctttttttggtgCTTGAAGGCTTGCAAAAAATGACAGAATAAATGAATTCTTTAAGAGAACTGTTAATAGAATGCATGACCAGTGCCACAGACCGACTGAAATAATCCCATTTTGACATTTGTAGCCTCTtctccaaataataaaaaaagacatttcaagtgaaaaaatttaaataaatgacatCAAATAAttcatcaaaacattgcaattcTATATGCtcacaaacaaaaaagttgATGTATGCAGAACTTTTTTGTTTGTGAGGGCTGTGgtcatgtgtgtttttgtggttgggcgagtgggtgtgtgtgtgtgtgtgtgtaaggatcTGCATAAGTCTGAGCCTACTCTTCTGGAACTTTGGAATGAAGGACACTGAAAGACATGAAGAAGATGATATGAAGAAGTGCTTTTTGAAGGATGTGGACTCTTCTGCTCATTGCTGATGGACTTCTTGACTTCTTCCTTCTGGCTTAAAATGGGCTCAATGTTTTGAACAGACCTTTTCTAGCGATGTTTTACCATAGACGAACACACTGACATTGACTTTGGTTTTCCAAATCTCCTGCTGTCTAGAGATCTATGCATGTGCTATGACTCAGGTCCAGAAGCCTGCTACTAAGTTCAGAACACAAACTTTCCCATCTCTACACTGCGAGCAGTGATGCCTTATCTGCatattaactttaatttaaggAAAGACATGCAAACTTCCCATTTAAGTTCTAGAGTGGAAATACTTATGAAGGATATTAAATTCTCTTACCGGTTTTTAACCCGTTATGTCAGTGGACTTGGATTTAGCACACAAATAATCAAGGCTAATGAACAGGTATGCTTTATTTTACTGCTATGCATATGAAGTTAAAGGATATACAAAACACTAGGATATGTTTAAATTATGGCTGTATATACTGCTAGCCTATGGCCTTGGTTTGCTGTAAATgaacttttgtacatttttgttattttgtataaaaaagttaagatggagcaaaaagtttctttaaaaaaaagaaaaagaaaaatctatttCATTGGTTATGTTTATATTACAGTTATACCCCTGAGCCTTGGAACTAAACTTAGCAGTaatgaaaaatttaaaatacaaaaaaatatataaataacttttctaccaacatatacacaaactctacttaatggcatttttaacaataagaaaacaaaacatttttattcttatttacaaAATAGGAAAGTGCTcggtttaaataatttaatgaatCTGTACTTAAGAATGGTCCGCTGTGGTGAGTGGTCCTCTACTTTATTTGTGATACTGGATGCTGTATTGTGTGCcctgaaatgtatttttgtactaGTAAACGATTTATTAAGGCACATCAGTACTATTTTCTTTTGATATAACAACACAGCTTCAACCCAATATTAGTTTCTTTTTCCTTGTGTGGctgacattttcttttttttgtttttcattttttttccttttaatattttgtttttctttgcagcACATTTCTAAGTATACcactgtattaataaataaattaatttttaaagtaaccTTGTGCTTCAGGTGTGAACACTGGATAAGGGAGTGAAATGGAGGGTGATACACTTGGATTGTGGCCAGTGTAAATGGCACAAAGGTTGTTGTAAAAGCAATATCATGGAGGTAATGACCCCACTATTGGTGCAAAAGGGCACTGGTTCCTATTCACAGGATAGTTTAGAGGGGGAAGATGGTCATCGACCCCGATCCTCACTTTTACCCTTCCCCTACACACCAGTGCAGTCATGACGATGCTATATATAACTATCTATGCCCAATTTTTTTCTGCCTGATTAAATGAAGCCTTTTTAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100508 lncRNA downstream 676 18218289 ~ 18227676 (-) True G74599
TU100453 lncRNA downstream 362214 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 365611 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 414387 17805335 ~ 17813965 (-) True G74447
TU100263 lncRNA downstream 973063 17254917 ~ 17255289 (-) True G74407
TU100649 lncRNA upstream 226323 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 237722 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 253407 18629061 ~ 18629405 (-) True G74716
TU100683 lncRNA upstream 261609 18637263 ~ 18640185 (-) True G74735
TU100688 lncRNA upstream 273785 18649439 ~ 18649771 (-) True G74740
XM_007246528.3 mRNA downstream 39953 18177682 ~ 18188399 (-) True galk2
XM_022672219.1 mRNA downstream 86660 18125787 ~ 18141692 (-) True sqor
XM_022672218.1 mRNA downstream 87026 18125787 ~ 18141326 (-) False sqor
XM_007246521.3 mRNA downstream 93598 18125787 ~ 18134754 (-) False sqor
XM_007246519.3 mRNA downstream 104654 18116445 ~ 18123698 (-) True LOC103024839
XM_015605114.2 mRNA upstream 30667 18406321 ~ 18426094 (-) True duox1
XM_022672236.1 mRNA upstream 54684 18430338 ~ 18448555 (-) False LOC103028541
XM_007246533.3 mRNA upstream 54684 18430338 ~ 18446963 (-) True LOC103028541
XM_022672235.1 mRNA upstream 54684 18430338 ~ 18446616 (-) False LOC103028541
XM_007246536.3 mRNA upstream 85721 18461375 ~ 18468113 (-) True parp16
TU100498 other downstream 198605 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 344566 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2449929 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3682914 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5606996 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 563520 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 695284 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1484040 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1651508 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1711764 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile