RNA id: XM_022672231.1


Basic Information

Item Value
RNA id XM_022672231.1
length 7949
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC103025779
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18228352 ~ 18375654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATCCTCTCGAGCtgctgtctcgctctctcttctcCATCATTACACGTGTCGAGGAGCAGACCTGGACGGATATTGGACTGCGGGGGATTTTTAATAACGGCTGGTTTGAGCTCGACAGTCGGAGCGGAGCGGGCTGGGACTGGGTGTTTATAGCGTTAAGGTTCGGGGCTTCGTTAACGGGTTGGTTGTCATCAGCACCAGCGGCGGGTAAAGGTAGCGCTCGCCCACAGATAGCGAGCGGGGGGCTGCTGAAAGAACAAGTTCGGGCTCTCCTCTCCACCACTACGGTTTCTGACATGTTGCTCATCCTGAAGAGAGCGCAGAGTTAGCTGGAGACTGCAGCCCGGCGCGCTGCGGCACCCGGGCGACGGACACGGAGCGTTTTCAGTTCGCGAGCTTCTCTTCTGTTGAGTAAGCAGGCGCAGCTAGCTCGCCCTGTGTTTTTAAAGGCTTTTCAGCGCTTTTGGCCAACGCCAACTTCACTGCGAGAAGCTGAAGAAGGAACAAAATGTCTGCCAGGGCTGCCTCTAATAAGAGTGCAGCAATGGAGGAGACAGTAATATGGGAACAGCACACAGTAACTCTACACAGGGCGCCAGGTTTTGGATTTGGAATTGCCATCTCAGGCGGCAGGGATAACCCCCATTTCCAGAGCGGAGAGACGTCTATTGTCATCTCTGATGTGCTGAAGGGAGGACCAGCAGAGGGCCTGCTGCAGGAGAATGACAGAGTTGTGATGGTCAACGCAGTCTCCATGGATAATGTGGAGCATGCATATGCAGTGCAGCAGCTTCGGAAAAGTGGGAAGAATGCAAAAATAACCATCAGACGTAAGAGGAAGGTGCAGATTCCCATGGGGCGtcacggagagagagaaactatGTCTGAGCACGATGAAGACGATGACAGCTATGAGGACGAGATCTATGAAGTACGAAGTGGAAGGAGCGGACCCAGTGCGTATAGCGGTGGTGGAGCTACAGGCCGGCGGAGCGGCAGAGGAGAGCGGCTGGGCGGGAGGAGGGAGCGGGACAGAGAGCGTAGCGGCTCCAGAGAGAGGAGTCTGTCTCCACGCTCGGACCGCCACTCTGTGTCCTCTAACCTGCCTCCACGCCCAGCCAAGGTCACGCTCGTCAAGTCCCGCAAGAATGAAGCAGAATATGGCCTTCGCCTGGCCAGCCACATCTTCGTGAAGGATATCTCCCCTGAGAGTCTGGCCGCCAGGGACGGCAACATCCAGGAAGGAGACGTGGTGCTGAAGATAAATGGCACAGTGACAGAGAACCTGTCGCTGATAGATGCCAAGAAGTTGATTGAGAGATCGAAGGGCAAACTGAAGATGGTAGTGCAGAGGGACGAGAGAGCCACATTGCTGAACATCCCTGACCTCGACGACAGCATCCCCTCAGCCAACGCTTCTGACAGAGATGATATTTCAGATATCCACTCTGTAgcatctgatcactcaaaccgaTCCCACGACAGGAAGAGGAGCAGTCGCTCTCGCTCCCCAGACCGTCGCTCAGAGCCCTCAGACCATTCCAGACATTCCCCTCCACAAATCAGCAATGGCAGTCATAGGAGTCGTGATGAGGAGCGCATCTCGAAGCCGCTCCCCGTGCCTGCTAAGATGGTGGAGGAAACGCCTAAAGCACTGGAGCAGGCTGGGACAAGAGAGGAGAAACAGCTCCCCCCTCTGCCAGAGCCTAAGCCTGTGTACGCCCAGCCTGGCCAGCCTGATGTGGACTTGCCCGTTAGTCCAGCTGATGCTCCTGTGCCTAGTGTAGCACACGACGACAGTATTCTGCGGCCCAGTATGAAGTTGGTGAAGTTTAAGAAGGGTGAGAGTGTTGGTCTGCGGCTAGCTGGGGGCAATGATGTGGGCATCTTCGTGGCTGGTGTACTAGAGGACAGTCCTGCTGCTAAAGAGGGTCTGGAGGAGGGAGACCAGATACTCAGGGTAAATAATGTTGACTTTGCAAATATCATCCGAGAGGAAGCTGTGCTCTTTCTGCTGGACCTGCCCAAGGGGGAGGAGGTCACCATTCTGGCTCAGAAaaagaaggatgTGTATCGTCGGATTGTGGAGTCGGACGTTGGTGACTCGTTTTACATCAGAACTCATTTTGAGTATGAAAAGGAGTCTCCATACGGTCTGAGCTTTAATAAGGGTGAGGTGTTCAGAGTGGTGGATACACTGTACAATGGCAAACTGGGCTCCTGGTTGGCAATCCGTATCGGCAAGAACCATCAGGAGGTGGAAAGAGGCATCATTCCCAACAAAAACAGagCGGAGCAGTTATCTAGTGTGCAGTACACTCTTCCTAAAACAGCAGGAGGCGACAGGGCAGATTTCTGGAGGTTTCGTGGTCTGCGGAGCTCTAAGAGGAATCTGAGGAAAAGCAGAGAGGACCTCTCCGCACAGCCTGTGCAAACCAAATTCCCTGCTTATGAGAGAGTGGTACTGAGAGAAGCTGGTTTCCTGAGACCAGTGGTAATATTCGGTCCAATTGCTGACGTTGCACGAGAGAAACTTTCTAGGGAGGAGCCAGACCTCTTTGAACTTGCAAAGAGCGAGCCTAGAGACGCTGGCACAGACCAGCGCAGTTCTGGAATCATTCGCCTCCATACCATTAAACAGATCATTGACAGAGATAAGCATGCCGTGTTGGACATCACCCCTAATGCTGTGGACCGTCTGAACTATGCCCAGTGGTACCCCATCGTGGTATTCCTGAACCCAGACAGCAAACAGGGCGTGAAGAACATGCGAACCAGGCTCTGCTCTGAGTCCAGGAAGAGTGCCAGGAAACTGTATGAGCGTGCGCTGAAACTGAGAAAGAACAACCACCACCTCTTCACCACCACCATTAACCTAAATAACATGAATGACGGGTGGTATGGCGCTCTAAAAGAGACCATCCAACAACAGCAGAACCAGCTGGTCTGGGTTTCTGAGGGCAAGGCTGATGGAGCTCCAGAAGATGACTTGGACATCCATGATGACCGCCTCTCCTACCTCTCAGCACCAGGCAGCGAGTATAGCATGTACAGCACTGACAGCCGCCACACGTCTGATTATGAAGACACGGACACAGAAGGAGGCGCTTATACAGACCAGGAACTGGATGAGACTCTGAATGATGAAGTTGGCTTACCCAGCGAGCCTGCGATCACCCGATCATCAGAGCCTGTAAGAGAGGACCCACCTGTCATCCAGGATGCTCCCGGGTACCCCAGCTACCAGCACGCTGTGCCCCAGCCTGAGCCCGTGAACCGCATCGACCCTGCTGGATTTAAAATGCCCGCTCCCCAGCAGCAGGCTGAGGCTGCTGTGGCCTTGCCCTCCTTCCCCActgcagtggcagcagcagcagcgccccctgctgttgaTCCCGCCACACCACTAGCGGGTATGACCCCCGAGGAGCCACCTGGCACACCTCAGGCCGACTCCCTTAACAGCCCCGCCCCAGAACCCGACCCCCAGCTCGACCCTGAGCTCACTCAGCCCCCAACACACGACCCCCACCAGTTGCTTCCGCTCGGCCCAGATCCAAAGATGTATAAGAAGGATCTGTACAGTGTAGACGAGCCTGTGCGCGTAAACCACGGGATGAAGCCTCAGCAGCAGCCACAGCAACAGCAGCCTATAGCTCCCCCAACCTCTCTGTCCTACAGCCACCAGCCTGTCTACCAGGACAAACAGCCATACCGCGAGTACGACCACCCGCCTTACGGCTACGACGGTGGCGGCTACGCTCAACCAAAGCCTCATAACTACGACCCACACCTGCACTACGACAACCGTGTGCCTCACTATGACGAGCAGTGGCCCCAATATGACCAGCAGACCTCGTCCCAGCCCCCACCCCCTGGGCCTGGCTACACTCAGGGCCACCAgccaccacctcctcctcctccagtgGGTTACGATCCTCGCTCCCCCTATGAGGATGGCCCCACGAGGGACTATAGTCCTCCTCAGCCCCGTTACGATGAGGCTCCTGTGGGTTACGATAACAGGCCGCGGCACGTCAAGCCTGTTGTGCCCGTTCGCTACGATGAgccgcctcctcctcccccaGTTACATATGATGCCCGCTCTCCTTATGAACCAGAGCCCCACACTTTCCCTATCAATGCCCCACGCTCGCCCGACCCTCCAAAACAGTATTATGGTGATGCTTCAATGAGACCCTCGTATAATCCGGGGCCTCAGAATCGAGGCTACAAACCAGGGCAGCATGAACCTTTGAATTCAGAGCCTCCAGTTCCACCTCCTAAGCCAGAAGTGTTGCTGTCCCCAGGGGAACCTGTCCATTCTGCAGCTTCGAAACCTCTGCCCCCTCCTCCCAGAGAAGACCCAGAGGAGGATCCTGCAATGAAGCCCCAGTCTGTTCTCAACAGGGTCAAGATGTTTGAGAATAAGCGCTCTGTGTCTGTAGACAGAGCCAAAGAGGCTGGAGATCTGCCAGGAATGAGGCCCACAGACCTCCCCAAGCCTGTGAATGCACCAGGGCCTGTGCTTAAAGCCAACTCTCTCAGCAACCTAGAACAAGAAAAGCCGGCATATAGaGCACCTGAGCCACAGAAGCCCCAGTCTCGGTTAGGAGAGGAAGTCGTCCGCTCCAACCACTATGATGCCGATGAGGATGAAGAGTACTACAGGAAGCAGCTGTCCTACTTTGATCGTCGCAGCTTTGACAACAAGGCAATAACTCAGCCTGGAGTCAATCGCTTTCATGATCTGGCTAAACCATCACAGCTTCAGTTAGGATACCCTTTCAACAGGACAGAATCGGCTGAGAAGGTGAGCCCTGTGGATAAGAGATATGAGCCTCTACCCCCGATTAACCATTCAGCGGCTCCTTATGGACAGTCAGGTCCTCCTGTTCCCCCCACATCTCTGCCCAAACTCAGCAACACTGAGGTGAACTCCATACCTGATCCCCACAACTCTCCCAAAGGCAAACCGGACCTGTCTACTCTCCGACCCCCAACCCGAGATGACCCGGTTCAAGGCAACTACCTTTCCCAGAAATCCCCGGTTAACGGCACTGACATTCCCCCCAAAACTCTGGGTGCCCCTGCTCCCACTAGCTATAACCGCTATGTCCCGAAGCCTTACACAAGCTCTGCACGACCATTTGAGCGCAAGTTTGAGAGCCCGAAATTCAACCACAACCTGCTGCCCAATGACACACAGGCCAAGCCCACTATAGTGAACAACAACCCCAAAACTCACCTCTCACCTCAGCCTCTGGAGTCAGACAGTGGAGTGGACACGTTTACTCGTACGATGGACAACAGGCCCAAATATCAGCACAACAACGTCAATGCTATCCCCAAGGCTATCCCTGTCAGCCCCAGTGCTCTGGATGATGATGACGACGATGAAGGACACACAGTGGTTGCCACAGCTCGGGGCATCTTTAACTGTAATGGCGGGGTGTTGAGCTCCATAGAGACAGGGGTGAGCATCATCATTCCCCAAGGGGCCATTCCTGAAAGCGTGGAGCAGGAGATCTACTTTAAAGTGTGCAGGGACAACAGCATCCTGCCACCGCTGGATAAAGAGAAAGGTGAAACTCTGCTCAGTCCCCTGGTCATGTGTGGGCCTCATGGTCTGAAGTTTCTGAAGCCAGTGGAGCTGCGCCTACCACACTGTGCGTCTATGACTCCTGATGGTTGGTCTTTTGCTCTAAAATCCTCCGACTCCTCGTCGGGTGACCCCAAATGCTGGCAAAACAAATCTCTCCCAGGGGACCCCAATTACCTGGTGGGCGCTAACTGTGTGTCCGTGCTGATTGACCACTTCTGAAGAGGACAACAGCTGGTCTGTTATCAAATGTGAAAGCGTCAGTGAAGAAGAACACGAGAAAGACTCCTCTCTTCCCCTTCATCCCTGCTCTGTTACTTCCTGGGGATTTGCTCCACTCTATGAaggagtctttttttttgtttgttttttggtccTCTTCTTTTTTGCAGAGGGAGTTTATTGTGCCCAAGAATATGCTCAGAGGACAAGGAGAGCACCCCCCCTGGTGCTGAATCCCTGCAAAACCCCCTCCTCCtactcctcttcttctttttttggtgCTTGAAGGCTTGCAAAAAATGACAGAATAAATGAATTCTTTAAGAGAACTGTTAATAGAATGCATGACCAGTGCCACAGACCGACTGAAATAATCCCATTTTGACATTTGTAGCCTCTtctccaaataataaaaaaagacatttcaagtgaaaaaatttaaataaatgacatCAAATAAttcatcaaaacattgcaattcTATATGCtcacaaacaaaaaagttgATGTATGCAGAACTTTTTTGTTTGTGAGGGCTGTGgtcatgtgtgtttttgtggttgggcgagtgggtgtgtgtgtgtgtgtgtgtaaggatcTGCATAAGTCTGAGCCTACTCTTCTGGAACTTTGGAATGAAGGACACTGAAAGACATGAAGAAGATGATATGAAGAAGTGCTTTTTGAAGGATGTGGACTCTTCTGCTCATTGCTGATGGACTTCTTGACTTCTTCCTTCTGGCTTAAAATGGGCTCAATGTTTTGAACAGACCTTTTCTAGCGATGTTTTACCATAGACGAACACACTGACATTGACTTTGGTTTTCCAAATCTCCTGCTGTCTAGAGATCTATGCATGTGCTATGACTCAGGTCCAGAAGCCTGCTACTAAGTTCAGAACACAAACTTTCCCATCTCTACACTGCGAGCAGTGATGCCTTATCTGCatattaactttaatttaaggAAAGACATGCAAACTTCCCATTTAAGTTCTAGAGTGGAAATACTTATGAAGGATATTAAATTCTCTTACCGGTTTTTAACCCGTTATGTCAGTGGACTTGGATTTAGCACACAAATAATCAAGGCTAATGAACAGGTATGCTTTATTTTACTGCTATGCATATGAAGTTAAAGGATATACAAAACACTAGGATATGTTTAAATTATGGCTGTATATACTGCTAGCCTATGGCCTTGGTTTGCTGTAAATgaacttttgtacatttttgttattttgtataaaaaagttaagatggagcaaaaagtttctttaaaaaaaagaaaaagaaaaatctatttCATTGGTTATGTTTATATTACAGTTATACCCCTGAGCCTTGGAACTAAACTTAGCAGTaatgaaaaatttaaaatacaaaaaaatatataaataacttttctaccaacatatacacaaactctacttaatggcatttttaacaataagaaaacaaaacatttttattcttatttacaaAATAGGAAAGTGCTcggtttaaataatttaatgaatCTGTACTTAAGAATGGTCCGCTGTGGTGAGTGGTCCTCTACTTTATTTGTGATACTGGATGCTGTATTGTGTGCcctgaaatgtatttttgtactaGTAAACGATTTATTAAGGCACATCAGTACTATTTTCTTTTGATATAACAACACAGCTTCAACCCAATATTAGTTTCTTTTTCCTTGTGTGGctgacattttcttttttttgtttttcattttttttccttttaatattttgtttttctttgcagcACATTTCTAAGTATACcactgtattaataaataaattaatttttaaagtaaccTTGTGCTTCAGGTGTGAACACTGGATAAGGGAGTGAAATGGAGGGTGATACACTTGGATTGTGGCCAGTGTAAATGGCACAAAGGTTGTTGTAAAAGCAATATCATGGAGGTAATGACCCCACTATTGGTGCAAAAGGGCACTGGTTCCTATTCACAGGATAGTTTAGAGGGGGAAGATGGTCATCGACCCCGATCCTCACTTTTACCCTTCCCCTACACACCAGTGCAGTCATGACGATGCTATATATAACTATCTATGCCCAATTTTTTTCTGCCTGATTAAATGAAGCCTTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100508 lncRNA downstream 679 18218289 ~ 18227676 (-) True G74599
TU100453 lncRNA downstream 362217 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 365614 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 414390 17805335 ~ 17813965 (-) True G74447
TU100263 lncRNA downstream 973066 17254917 ~ 17255289 (-) True G74407
TU100560 lncRNA upstream 79984 18350631 ~ 18350936 (-) True G74640
TU100649 lncRNA upstream 331330 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 342729 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 358414 18629061 ~ 18629405 (-) True G74716
TU100683 lncRNA upstream 366616 18637263 ~ 18640185 (-) True G74735
XM_007246528.3 mRNA downstream 39956 18177682 ~ 18188399 (-) True galk2
XM_022672219.1 mRNA downstream 86663 18125787 ~ 18141692 (-) True sqor
XM_022672218.1 mRNA downstream 87029 18125787 ~ 18141326 (-) False sqor
XM_007246521.3 mRNA downstream 93601 18125787 ~ 18134754 (-) False sqor
XM_007246519.3 mRNA downstream 104657 18116445 ~ 18123698 (-) True LOC103024839
XM_015605114.2 mRNA upstream 135674 18406321 ~ 18426094 (-) True duox1
XM_022672236.1 mRNA upstream 159691 18430338 ~ 18448555 (-) False LOC103028541
XM_007246533.3 mRNA upstream 159691 18430338 ~ 18446963 (-) True LOC103028541
XM_022672235.1 mRNA upstream 159691 18430338 ~ 18446616 (-) False LOC103028541
XM_007246536.3 mRNA upstream 190728 18461375 ~ 18468113 (-) True parp16
TU100498 other downstream 198608 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 344569 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2449932 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3682917 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5606999 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 668527 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 800291 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1589047 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1756515 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1816771 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile