RNA id: XM_022672244.1


Basic Information

Item Value
RNA id XM_022672244.1
length 1763
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC103028224
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18978848 ~ 18987058 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aCAGGGCGGTTAGCTGACTTTAAATATGTGTCGCGTCgtccggcttaaatactgtgtatacactacaagcttgtGAGACTGACGAGGCTtggcgtggacaaagtgggtgggactggacgcgctggacgtccaactccgccttcccgcaggctgcagtcagtagcagttggttatttttcttcttctgctgccgttgctgaggaacgcctgctcagcttcctgtaattggtccgaaagtcCGCAGCATTCAGAAAAGCGCTTTTACACTGCAGGTCAAAACAACTGGCTGCGTCACACTGCTTACACAGAGAGGCACCATGATACCGTCTTCAgtcatcatcatcctcaaccTGGCTGCGTTGTGCACAACATTTGCCCTTTCAGAGACGTCAGCTCCACTTATTGATGAAAAGCCTTTTGTGATCATATGGAACGCCCCAACCTCCAAATGCCAACAACTGAAGATCCCATTGGACTGGTCTGCTTTTCAGGCCATTACCACACCAGCCAAAGTCCATAACCAAACCCTGACGCTGTTCTATAAGAAAAGAATAGGCCTCTTCCCTTATGTAGACCTTCAAACCATGGAACAGTACAATGGTGGCATTCCGCAAAGGGGTAACCTATCAGCCAGCCTAAAGAAAGCTGAAGCAGAGTTCACCCGCTATCTCCCAAGCTCTTCACCTGGCCTTGCTGTCATTGATTGGGAAGAGTGGCTTCCTTTCTTTGACCAAAATGTGGGCTTAAGAGAGATCTATAAGGAGCTGTCCCTTAACCACACTCTTGAGCAGGATGCTTCTCTAAGCAGGCAGCAGGCCAAAAGCAAAGCCAAGCAGCAGTTCCAGACCACTGCCAGAGATTACATGGAGAAGACCCTGAAGTTAGGAATTACTCTCAGACCACAGTATCTCTGGGGCTTCTACTTGTTCCCTGACTGCAACAACTATGATTTTGAGAATCCAGGCTATACAGGGAAATGCCCACAGAACACAACACAGTTAAATACTGAACTCCTCTGGCTCTGGAAAACAAGTACAGCACTGTTTCCTTCAGCATACATACCAGAGTCCATCAGTGGAAGCCAGAAGGCAGCACTGTTTGTCCGTCACCAGGTGAAAGAGGCACTGAGAGTCGCAGCCTTGTCTCAGCGACCCTATACTGCCCCAGTTTATGTGTACCTGAGGCCTTTGTTGCGGGACCAGAAAGAAGAGTACATGCAGGAGGTTGACCTGGTGAGGAGTGTTGGGGAGAGTGCAGCTCTAGGAGCTGCTGGATGTGTGCTGTGGGGCTCCAGTTATGATTATAATGACATGACATCATGTGAAGCCCTTTCTACATACTTGTCCAAGACTCTAAACCAGTACATTGTGAACATCACCGCTGCAACGCGTCTCTGCAGTGACATGCTCTGTCAGGGTAATGGACGCTGTGTTCGTAAAAACTCTGATTCTGATGACCACCTTCAGCTTAACCCCAAGAGCTTCAACATCCAGAACATTGCTGGGAAATATACTATCACTGGGACGCCTTCCAGCAGTGACCTGACTGACTGGGCCAACAAGTTCACCTGCCAGTGCTATGAAGGCAGAATCTGCTCTGGTAAAATATCATCTGGGTTATTATCCAGTATGTATgacagtaaaactgtgctcctGACAGTGCTCCTTCCAGTATGCTTACTGTTTAAATCAttgtagtttttaatgtttgttacAATACCTGGTTATGAAACTTTTACCACAACTGTTACAACaattaaagaa

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100756 lncRNA downstream 10938 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 28732 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 329077 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 338663 18637263 ~ 18640185 (-) True G74735
TU100664 lncRNA downstream 349443 18629061 ~ 18629405 (-) True G74716
TU100779 lncRNA upstream 6178 18992823 ~ 18994884 (-) False LOC103034453
TU100915 lncRNA upstream 293007 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 300695 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 338747 19325392 ~ 19418804 (-) True G74928
TU100913 lncRNA upstream 358300 19344945 ~ 19350011 (-) True G74909
XM_007246627.2 mRNA downstream 1683 18975308 ~ 18977165 (-) True LOC103027908
XM_022671893.1 mRNA downstream 5535 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA downstream 5704 18970412 ~ 18973144 (-) True LOC103034129
XM_007246544.3 mRNA downstream 353653 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 510735 18461375 ~ 18468113 (-) True parp16
XM_007246551.3 mRNA upstream 6023 18992668 ~ 19008366 (-) True LOC103034453
XM_022672245.1 mRNA upstream 37045 19023690 ~ 19046218 (-) True LOC103035727
XM_007246555.3 mRNA upstream 37045 19023690 ~ 19042135 (-) False LOC103035727
XM_007246556.3 mRNA upstream 94503 19081148 ~ 19086198 (-) True LOC103036047
XM_022672248.1 mRNA upstream 100248 19086893 ~ 19095789 (-) False asb15
TU100745 other downstream 38384 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 949101 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1095062 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3200425 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4433410 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 84293 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 873049 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1040517 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1100773 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1909458 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile