RNA id: XM_022672253.1


Basic Information

Item Value
RNA id XM_022672253.1
length 2509
RNA type mRNA
GC content 0.54
exon number 4
gene id fezf1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19330251 ~ 19334337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagcgcGTGGCCAGAcgctgcgctgcgctctctccctctatcaTTGGTGAGTTGGAGGCGCGTTATTGGCCAACACGCCCCGCTGAGGTGCGCATAAGTGCCGATCGCCAGCGGTGAGGCTGCGCCACGCTCTCCGCGCGCTCACAGGGAGCCAAACTCAGGCGCACCGGCACGCACGCGCGCTCGCACAcgtactcactcacacagggggagagtgagagagaaatagtggGGAATaggaaaaagaaggagagaaagagtgagggagagagagcgctgcGCTCGGAGGCGATGGACGGCGCGCGCTTCTCCTCAGCGGGAGCGCCCGGCTCCCCTCCGCCACCGCGCGGCCCCGCGTGCTCCATCACCGCCGCTGCCGTAAAGCCGCTGGCCTTCTCCATTGAACGGATCATGGCGCGCAGCCCGGAGCCGCGCTCGATGCCGTTGTTCCCGGCGCGCGCCTCTCCCCCCGCGCTGCGCTGCGTGCTGCCGCTTGTGCCCCTCGCCTATGAGGCCGCGCACGGGCTCGAGCTCGGTGGCGGCGGCGCTCTGCACGCGCCTACCTCTCAAACATTCTCccagcaccagcaccaccatcaccaccaccaccagcagcagcacgcGCACGTGCACGCGCCCGGCGGTGGCGAACTGATGGGCTACAAACACGAGCACAGCCACTACAAACTGTTCCGGCCGCGCGTGCTCAGTCCGGTCACGGCGCACGCCTTGCAAGGCGCCGCGCGCTACGTGAGTTGTGCGGCGGAAGGCGCGTGCGCGCCCGCTGCTGCTGCGGCGGCGGGGCTGCTCGGGCTACATCCAGTGGCCTCGTACTTTCTGAACGGACCGCTGCAGAAGGCCGCGTGGGTGGAGAAGGCGCGCGCGGGAGCCGAGAGCGCGCACCTGCTCACAGAGAAACTCCTGAAGAACTCGGCCAAGATCGGCGGGGCGCCTCACAGCAAACCCAAAGTGTTTACCTGCGAAGTGTGCGGCAAGgtGTTTAATGCACATTATAATTTGACACGCCACATGCCCGTGCACACCGGCGCCAGACCGTTCGTGTGTAAAGTGTGCGGCAAAGGATTTCGCCAGGCGAGCACTCTCTGCCGACACAAAATTATACACACTCAGgaAAAGCCTCATAAATGCACTCAGTGTGGGAAAGCGTTTAACCGGAGCTCCACTCTCAACACACACGCGCGCATACACGCCGGATACAAACCGTTTGTGTGCGAGTTCTGCGGGAAGGGCTTTCACCAAAAAGgCAACTATAAAAATCATAAACTGACCCACAGCGGAGAGAAACAGTTTAAGTGCAATATCTGCAACAAGGCCTTCCACCAGGTGTACAACCTCACCttccacatgcacacacacaacgaCAAGAAGCCCTTCACCTGCCCCACGTGCGGCAAGGGCTTCTGCAGAAACTTTGATCTTAAAAAACACATCCGGAAACTGCACGACGTTTCCCCAGGACCACCCTCaccgcccacccctactgccgCCCACACACAGTGAGCTTCATTCAGCACTGCCCGCGCGCCCGCGCCCTGGACCTactgcatcatcatcattattatcatcatcatcatctgccGCATCCTCATCTTCTtcgctcttaaaaataaaggcgcCAATTTTTTTCTCTTACTGTTTTTGGAGTAATGCCATAAAAGAACCACATTTGGTTCTCTTTtggtttttgttctgtttaaagAACAGTCCAGAACCGTTTGGgaccctttatttttaagagtgcacaACGCCTGCTCCACCTTCTTCTGCTTTTGGCATTATCCTGCGCGCGACCACCGTGCGTGACCCCAACACAGCGGCTTTTAGGGGGTTTAAtacgtttttttctttcacaaCCTTCCTTTCACTCTCAGGGTTTAATCTAagttgtacattttattatattatacgttttatttatttgccatTGCAATGATGTCGTTAAGTTATAGAGAGTGAACTCTGATATACAGGAAAATTACTGCTGTGTACATTTCCGCATTTTGTACAAAGTGTTTCTTATTTATAGtccatttttgttgttgttaaatCAGCGTGAATTATGCAAGGGTTTGTTGTAAATAATTACCACTGACACCAGATTTCTCATTAAACCCATAGATTATAAATCACTATAAGAAGgggaaatacagtaaaataaagtatgGTTTATGTTGAAGCGTTTCCAACTCGACGTTCGAGGCATGTCGTTCAGCCTGTTCTGCTGCTGCCTAAAGGCGTTTCGGACCCCAGTAATGGAGGAGTAATGGGACTTGTGCCTAATGAGAAAATGAACTATAATTAGGGAGCGGAGATAAACATTGTGGATGGATgggctgctgctggtggtggtgggaggGAGGGTGTGAGGACCACCACGTCTCAGCTCACGTCCCTGTGAGTGCGAAGGGTGAGTGATTTTCCCCTCTGTACACGTAAAGGATCAGTGAAATGTGTAACGTCTAAAGAAAGGCCTATGCAGAAGTGTGGA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K24502 FEZF; Fez family zinc finger protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100845 lncRNA upstream 133840 19194542 ~ 19196415 (+) False cadps2
TU100846 lncRNA upstream 134107 19194373 ~ 19196148 (+) False cadps2
TU100802 lncRNA upstream 244024 19085803 ~ 19086231 (+) True G74833
TU100800 lncRNA upstream 247734 19082312 ~ 19082521 (+) True G74831
TU100776 lncRNA upstream 335392 18992788 ~ 18994863 (+) False G74810
TU100875 lncRNA downstream 125636 19459973 ~ 19462085 (+) False tmem17
TU100986 lncRNA downstream 143661 19477998 ~ 19481088 (+) True G74951
TU100987 lncRNA downstream 146014 19480351 ~ 19481987 (+) False G74951
TU100995 lncRNA downstream 172781 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 172781 19507118 ~ 19507522 (+) False G74958
XM_007246571.3 mRNA upstream 7480 19140151 ~ 19322775 (+) False cadps2
XM_007246574.3 mRNA downstream 6943 19341280 ~ 19362921 (+) True aass
XM_007246575.3 mRNA downstream 6943 19341280 ~ 19362921 (+) False aass
XM_015605117.2 mRNA downstream 119716 19454053 ~ 19459308 (+) True slc15a5
XM_022672263.1 mRNA downstream 125621 19459958 ~ 19462187 (+) True tmem17
XM_007246588.3 mRNA downstream 159585 19493922 ~ 19503421 (+) True cnot2
TU100801 other upstream 244699 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 875058 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3041926 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4409252 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4680704 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 193654 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 869282 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1688919 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1754285 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1916130 21250467 ~ 21264776 (+) True mov10l1

Expression Profile