RNA id: XM_022672259.1


Basic Information

Item Value
RNA id XM_022672259.1
length 5071
RNA type mRNA
GC content 0.48
exon number 30
gene id ptprz1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19364598 ~ 19437614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caGGGCTCGCGCATGGCCCCGGGCTGCAGCTTCATTCAGCGCGATGGCGCCTGTGGAAGCGTGACAGCGGCCGCAGCTCGCGCCCCTCACTGATGTGATTCTGCAGCGCCGCGGCGGTCGGTCTGGACTCGGTCGGTCCTGTGGTGCTCTTCATCTTTACGCTCCTGTTTCGCTCTTTCTCCTCtcaagtcttttttttctcactgaaAATTATGGAATCTCTCGACAGTAAATGTGCCCTTTCGCTGGCTCTCTTACTCATCTGTCAAATAGTGGAAGTGTCACAAGCCTATGGGTTCCGATCACAGAAGAAGCTTGCAGAAAACATAGACTGGTCCTATGCAGgAACTCTAAACCAAAACAACTGGGCCAAGAAATACCCATCATGCAACAATGCCAAACAGTCACCAATAAACATTGAGGAGAGTCTGTCGCAGGTCAAAGTTCAATACCAGAAGCTGAGGTTAGAACATTGGGATCAGGACACCAGTGACTTCACAACTGTGAAGAACGATGGCAAGACAGTGGCCATTGATGTGGGTGGCGAGTTCTTCATTAGTGGTGGGGGATTAAGGTCCCGGTTTAAGGTGGGCCGCCTCACCTTTCACTGGGGCCGCTGCAATGCTTCTTCAGACGGCTCTGAGCACAGCCTGAATGGAGTCAAATTCCCCCTGGAGATGCAGATATATTGCCATGAAGACAATCATAGCTCTGTTGATGCAGCTATAAGAGATGGAGGAAGAATTACTgctctttctgtgtttattgAGACAAGTGTTGAAGATAATGAAAACTATGCAGCCATCATTGATGCAGTCAACAGTGTCAGCAGACAtgGCAAGACTGGCAGTGTGTCTCCATTTACCCTGCAAGGCCTCCTGCCTAACTCCACTGAGAAGTACTTCATCTATAACGGCTCTCTTACCTCCCCTCCTTGCTCTGAGACTGTGGAGTGGATTGTTTTTAAGAACACTGCAGCCATCTCTGAGGCACAGTTGGAGATGTTCTGTGAGGTGATGACCATGCAGCAGGCCGGCTATGTGATGCTGATGGACTACCTCCAGAATAACTACAGAGAGCAGCAAAGTCAGTTCATGGGCCAGGTCTTCTCCTCATACACTGGCACTGAAGAACTCCTCACACCTGTTTGTAGCACAGAGCCAGAGAATGTGCAAGCTTACCCGCACAACTACACAAGTCTTTTGGTGATCTGGGAGAGACCACGTGCTGTGTACGACGCCAGCATAGAGAAATACTCTGTCACCTACCGACAAATACAGGGAGAGGACCCACCCACACTTGAATACCTTACTGATGGAGACCAGGATGTGGGAGCCATCATCCAGGACCTGGCAGCCAACACCAGCTACATGGTGCAGGTGGTGGCCGTGTGCACTAATGGCCTTAATGGCCGCACGAGTGAGCAGCTGATAGTGGACATGCCTGTGAATGACCCTGAAACAGACCCTGATCCTGATCCTTTTGAACTGGATGAGGAGGAGAGCTATCAGCCCAACCCCTTTTTGGTTAGACATGACTTGAATCAGCCACCCTATCCAGTCCGGACCACAACACCCCGACCCAGATTTACTACAACGGACCCGCCAGTTCCTCCAATCTTTGGTGTAACATCAAGggctactactacaactattgctactactacaactattgctactactactgctactactactgctatttcTACTACAACATCCACTGAAATCCAAGTTCAATACACTCCACAAACAGCGCAAACGACGACTATCACTACTTTAATGACTGATTTACTCGCTCCTGAGTCAGATTACAGTGGCAGCTCAGAACCAACAGATTTACTTACTTCTGAGTCACATTACAGTAGCAGCACAACACTAATCATGGCCACAGAGGGCGACAGCAGCAGTCATACCTTTGTAGAACCTACAGTAGAAACAGTCACTCCTGATGCAGAGTCTTCATCAACCTCTGCTGTAGCTGGAGGAGAGGAGGTCATTGACTCTATTGACAACTCTGGGGACAGCACAGTATCTGTTACTACAGTCACTACAGTTAGCCCTCTCTCTGAAAACTTTGCAACATCAACCTCCTCTCTCCCCCCTCCGGAGGTCCCACTGCAGCCTACAACACCAAGCGTGCCTTTCCCCACCACCACTGCCTTCAGTGCAGTCCTGTTGCAGACCACCCAACCAGTGTTCAAGGATGCCAGTAACAGTAGTCACGAGTCCCGTGTGAGTCTTGTAGGCAGTGTGGAGCGTCAGAGGAAAGCTGTGGTCCCCCTAGCTGTGGTCTCCACCCTCACTTTCCTGTGTCTTGTCATACTGATTGGAATTCTCATCTATTGGAGGAAGTGCTTTCAGACGGCTCATTTCTACATAGAGGACAGCACCTCTCCACGAGTCATATCCACCTCCCCTGCTCATCTATTACTTCGCACAGATGAGCACGAGCCTCTCTCAGTGAAGCAGTTTGTCAAACATGTTGCAGAACTTCACAACAACAACTCCTTCTCCAGAGAGTTTCAGATTTTGAAAGAGTGTTTTGAGGAGGTTCAGGCTTGCACTGTGGATCTGGGAACTACAACTGATAGCTCCAACCACCCAGAAAACAAGACCAAGAACCGATATGTCAACATTTTGGCCTATGACCACAGCCGAGTCCGACTTTCAGCCCAGTCTGACAAAGATGGAAAGAATGAAGGGGACTATATCAATGCCAACTTTGTGGATGGCTTCAACCAACAGCGAGCCTACATAGCAGCTCAGGGCCCTCTTAAGTCGAGCACTGTGGACTTCTGGAGGATGGTGTGGGAGCAGAATGTGGGAGTGATCGTCATGATCACAAACCTGGTGGAAAATGGAAGAAGAAAGTGTGACCAGTATTGGCCCCTGGAGACCCAGGAGGAGTACGGCTGTTTCCTTGTGACTGTGAAGAGCACTGAGGTTATGGCTTACTACACCCAGAGAACCTTCACCATTAGAAACACACATGTAAAGAAGGGCTCTCAGAAGGGTCGGGCTAATGAGCGAACAGTAACACATTACCACTACACACAGTGGCCGGATATGGGTGTGCCCGAATATGTGCTGCCGGTGATCTCTTTCATCCGCAGGTCATCCAGAGCCAGGACACAAGACATGGGTCCTGTGGTTGTGCACTGCAGtgCTGGTGTGGGACGAACAGGTACATACATTGTGTTGGACAGTATGATGAAACAGATCAGTGAGCAGGGTCTAGTGAACATCCTGGGCTTCCTAAAGCACATCCGCACACAGAGGAACTACCTTGTGCAGACTGAGGAACAGTATGTCTTCATCCACGATGCGCTGGTGGAAGCCATTCTAAGTAAGGAGACAGAGGTACCCACGAGCCGCGTCCATAACTATGTTAATGAGCTGCTGACCACTGGGCCTTCTTGCAGGACTCGCCTGGAGAAACAGTTCAAGCTGGTGAACCAGTCCAGTGCCAAGCAGTGTGATTATTCTTCTGCTCTGAAAGACTGCAACAGAGAAAAGAACAGGAGCTCCTCTTTGATACCAGTTGAGAGATCCAGGATATGTCTGTCAACATCAGCAGATGAGACTACAGACTACATTAATGCTTCTTATATTCTGGGTTATCGAAAAAGCAGTGAGTACATAATTACCCAAAACCCACTGCCCGCTACCGTGAAGGACTTCTGGAGGATGATTTGGGACCACAATGCTCAGGTCATCGTCTCACTGCCTGACACGAGCAGCCTGACAGAGGAACCTGAGCCAATGATCTTCTGGCCCAAACGAGATCAGCCAATTAGCTGTAGCATGTTCACAGTCTCTTTAGGAAGGGAGGagcgtgtgtgtatgtctaACGAGGAGATGCTGATTGTACAGGATTACATCCTTGAAGCTACTAAGGACGACTATGTTCTGGAAGTGAGGCATTACCGTGCGCCTCGGTGGCCAAACCCAGACGCCCCCATCAGTAACACATTCGAGCTGATCAACATCATCCAGCGGGAGCGGAGTTTAAAAGAGGGGCCCATTGTAGTACATGATGACTACGGGGGCGTGACAGCTGGAACGTTTTGTgctcttcacactctgctccagCAGCTGGAGACCGACAGCTCAGTGGACGTGTACCTGGTGGCCAAGATGATCAACCTGATGCGGCCGGGGGTCTTCACAGATATTGAGCAGTACCAGTTCCTCTACAAAGCCATCTTGAGTCTGGTTGGGACCCAAGAAGATGAGAAAGCACTTCAGTCCTCCGACAACAACGGCGCCGTCCCAGGAGGCCCTGCAAGCGCCACAGAGAGTCTGGAGTCCCTGGTGTAACCATAGCAACGAGCATACGCAGCTCACACAGACGCTCCCTCTTCCTGCTGCTCCGCTCTTCTTTTATATCCGTTCATTCTCCCCCTTCATCAGACAGCCCGCATCACTGGACATGGTGCAAATCCTGGAACTCGGAATGTGTGCCTTTGTACATGCGTCCTCTTCACCCACTCTAATACAGTTTAAGGTAGACTAACGTAGTCTATGTCGCTGCCACCTTTTACTAACCTCTTACTAATTTTTCTTAGAATTGCATATTTATTGGCATTATGTCTcatttaaagggaaaaaaaatcgaTTTTTAATAAGACATATTTTATTAGTCTATATTTTGTAGTAACTGAAAGCCACGTTGTTTTTCCACACGGATGTAAATACAAAGAATGTGGCATCTTTTTCCAGTCacagttttcaaaaaaaaaaaaaaaaaaggtcacggaataatattctaatgtgtaaataatataatagcaaCCAAGTCAATGGACCAAATTTCTATTTATAAGattagatttttatattttactattgtAGTGCTTTACACGTTATGTATGAATGCACTCTAATACTCTATAGTCAAAACATTGTTGTGATATTTCTGAAGTTGTCCCAATGTTTTGTACGCTCATCAACTTAACATAAATCGTGATATACTGACACTCTTTAGCTGTACATAGAATGTTTCTGCTATATGTAGgataaaacacaacataaataaaaccaaataagCAGGAGTTATTTGTTTTGCACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100916 lncRNA downstream 9547 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 14587 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 22662 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 74311 19287340 ~ 19290287 (-) True G74915
TU100779 lncRNA downstream 369714 18992823 ~ 18994884 (-) False LOC103034453
TU101154 lncRNA upstream 203209 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 307952 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 361773 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 367154 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 433530 19871142 ~ 19872681 (-) True G75106
XM_022672248.1 mRNA downstream 268809 19086893 ~ 19095789 (-) False asb15
XM_022672247.1 mRNA downstream 268809 19086893 ~ 19095789 (-) False asb15
XM_015605110.2 mRNA downstream 268809 19086895 ~ 19095789 (-) True asb15
XM_007246556.3 mRNA downstream 278400 19081148 ~ 19086198 (-) True LOC103036047
XM_007246555.3 mRNA downstream 322463 19023690 ~ 19042135 (-) False LOC103035727
XM_015605131.2 mRNA upstream 24745 19462357 ~ 19473042 (-) False LOC103041446
XM_007246582.3 mRNA upstream 24745 19462357 ~ 19473042 (-) False LOC103041446
XM_007246580.3 mRNA upstream 24745 19462357 ~ 19473042 (-) False LOC103041446
XM_007246579.3 mRNA upstream 24745 19462357 ~ 19473042 (-) True LOC103041446
XM_007246581.3 mRNA upstream 24745 19462357 ~ 19473004 (-) False LOC103041446
TU100809 other downstream 291710 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 424134 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1334851 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1480812 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3586175 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 422082 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 589550 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 649806 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1458491 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1832517 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile