RNA id: XM_022672310.1


Basic Information

Item Value
RNA id XM_022672310.1
length 5066
RNA type mRNA
GC content 0.45
exon number 29
gene id ankrd27
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20840504 ~ 20863315 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGTCGGGGAAGTGCACTACGGAGCGGGGCTATGATGTTCAGGCGGACTCGGTTATTGTGGCTGTACTcgaataaatgttaaatttctCGGATATATTTGGTGGGCAAAAACCAGGTGTCCGAGTGGCGGGTCCATATGGCTGTGTATGATGAGAACATTCTGAAGAATCCCTTTTACCTGGCACTGGAGAAGCAAAGACCAGACCTGTGCAGCCGAGTGGCAGAAGTGCATGGCATTGTCTTGGTTCCATGTCGTGGAAGTTTATCGGGTGGTTCATACACAGCAGCACAATTTGAGAACAATGTACTCCTGCCTGCAGAACAGGGATATCAGACAGTTGATGGGAAGGAGGTTTCCATAGAGAATAACCAAGTGAATTTGGGATCAGGGTTTCTGAACTCTGCCTCTGTTCCCATTCTGTTTGAGGAAACTTTCTACAATGAGAAAGAACAGGCCTACAGTATCCTGTGCATCAGTCGACCCATTGACTGTGAGCCAAGCCCAGTGGAGGTGAGTCCTGTCCCTGGACTGTACTGCTTGAAGAATGTGGAGGAGGTGAAGGAATTCCTGGGCCGCCATGCCGAGAAACTGGATAAGTTCATTGCTGCGTTTTGTAGCTCCTTCAAAGAGCTGGATAGAAAGGGCCTCCGCCATCACATAGATGCCGTACATAGTCTGTACATAAAGTGTCTTCAGTGCTTGCTGAGGGATTCTCGTCTGAAGGTGCTGACCAAACAGGAGCTTCAGATGGCACTTCTTAAACAAGCAGTGGAGATGTACATACATCATGGTATCCATGATTTTCTCTTTAGTTATGTTGGAACTCTTGAAGCAAgccagGATGCTGCATTCAATAAAACAGCAAGAGGACTGCAGGATCTGCAGCAGAAAGATATTGGTGTTAAGTCAGAATTCAGTATAAATATTCCACGTGCGAAGAGGGAATTGAATCAGCTCAACCGTTGCACTTCTCCTCAGCAGAAGCTGCTTTGCCTCAGGAAGGTCGCCCTCACTATTATGCAGTCGCCCAGTCGCACAGtTAATTTGGAGGCAATATGTGCAGATGATCTCCTTTCAGTTATTCTTTATCTGCTGGTAAAAACAGAGATTCCAAATTGGATGGCAAATCTTAGCTACATAAAGAACTTCCATTTCTGCAACTCTGTCAAGGATGACCTGAGTTACTGCCTGACCTCGTTTGAGGCAGCTGTGGAGTACATCAGCCAAGGCAACCTTAGTCAAGATCCCACGGGATCAGGGGAGCTGAATGACAAGCTTTTCTTCAGACAGAAGATGAATCTTCTTTCTCAGAGTTCCTCTACACCTATAGACTGCTTGTTTGAGcacaTAGCAAATGGCAACGAGGTGGAGGTGCAACGCTTGCTTAGTGAAGGCGAGAGTGAGGAAGACAGGAGGCAAATGTGTCACCCGCTCTGTTCCTGTGATGCATGTGATCTGCGGGTGTCGGGgAGATTAAATGACCCCTATATAGTCACTCCATATTCCCGGGATGACCGTGGCTACACTcctcttcatgttgctgctataTGTGgtCAGTCTCTTTTGATTGACCTGTTGGTGTCAAAGGGAGCTCCGGTAAACGCCACAGACTACCACAGTCTCACACCTCTGCATCTTTCCTGCCAGAAGGGGTACCAGGacctgcagctgctgctgttgcactataaggcaaacACAGATGCTCAGGACAATAATGGAAACACTCCTTTGCACCTGGCCTGCATGTATGGCCATGAGGATtgtgtaaaggCTCTGGTTTACTATGACATGCACACATGCCAGCTGAATGTACAGAATGATAAAGGCGACACAGCACTACACATTGCAGCACGGTGGGGCTACGAGGGCATCATAGAGGTGCTATTAGAAAACGGTGCCTCCACTCTTAATCACAACAAGGCAAACCAGACACCACTGCACTGCGCACTCAACTCCAAGATTCTGTCTGTTCTGGAGCGTACACGCAATGGCGCTAGTAAAAAGGAGAGTGCGTTTGAgTCTCCTAGCCATTCCCCGCAGCCCTCTGACTGCAGCAGTCGGCGCTCCTCTATATCCAGTACCTGCTCTCTGCTCTCTTTGGACACACGGCCAGAAGGTGACAATGTTCGTCACAAAGAGGTGGAGAAGCTGCTGCGGGCAGTGGCAGATGGAGATGTTGAAATGGTGCGTTACCTGCTGGAGTGGCTAGACGAGGAGCCAGAGGAAGATGAAAAAGCCGAGATGCCAGATAAAACAGAATTGTGCCACCCCCTGTGTCAGTGTCCAAACTGTGAGCCTACTCAAAAGaaGTTATCTACCCTGCAGTCAGATGGGCTGGGTGTGAACAGTAGCAGTGTGGATGGGTTCACTCCCCTGCATGTGGCAGCGCTGCATGGACACACAGCACTGGTCTCTTTGCTCATCCGCCATGGAGCCAACATCAACTCCCGTAATGGCCAGAGTGCCACGCCCCTCCACTTGGCCTGCCAGAACAGCCACATACAGGTTGTGACCTCACTTGTGGAATGCAATGCCAAGTTGAATAAAAGGGATCAGTTTGGGAACACTCCTCTGATTCAAGCCTGTCTAAAGGGACATGAGCAGACAGTGGAAGTCCTACTTGAGAGTGGTGCCTCAGTGAATCTGGCTAATAACCAGGGTAATACAGCCATACATGAAGCAGTTAGGGGAGGACACCAGGCTCTAGTAGAGCTCCTACTGCAAGCTGGTGCTCTCACACACCTCAGAAACAAGAGACAGAGGACGCCCCTCGACTGTGCACAAGAGACGGCTAGCAAgAACACATTAATCCTGAAGATTCTACAGAAAGCATGTGACCCCCATCCTGACGCTAATCCTGTTAGACAGTCCTGCATGCCCCAAGAAGCTCTGGGCAGAACGCCTTCTCTTGTCCAGAGGATGAAACAACACAAGGGCCCTGACCaggggagaagagagagagacgagttATCACACAGAATACAGCAGATGAAGAAGTCTGTTCACCAGGATGGAACCATTACCTACACAGAATCTCCAAGACtgGGTGGCAGGAGTGGTAAGAGGCGACTCCAGAGGGGAGAGACTGTGGATGGCTCCGGTCCATTCACTCATCCTGCTGAACACTCCGCATCATCTCAGCAGGGCCCCCAGAACCAGACCAAAAGCCTGACCCGCTGCCACACTATCCATCAGGACCTGGCTCACAGCACTCCACTGGTTCTGGAGCAAACAGACTGCAGCTCCTCTATGGACAAGATGGCTGAAAGTGGTGTTAATGGTCCTCAAGACCCCTCCTCTGCCCTCAGTGACCTCTCTCCCAACTGCACACCTGAACCTGAGCAGGTTAACGGGGAGTCTGTGGAGATTGGGCAGGCCTGCATGGAGGAAGACGAGGAAATGCAGCACATGAGGAAGAACTCTGATACTGCTTTCACAGAGATGGATAATGTTGTGCTCTGAGGATCCTCTGAGGCCTCTCTCCTGAATGTCCACCTGATGCAAGGTGAAGATCACTAGAAACTTTTGTGTTCAGCCGTGCTTTTGAACATCTTGCTCAGCTAGTTTAATGGGCTTGCTTAAGTCAGTGTTACTAAACTCATCCCAACAGCTTCTCACTGACTGGAACAGTTCATTTAGTTCAGAACAGCTTTTTTAAATGCTAAGCTTGTGATTTAAGGCCACTCAGTTCAGTTGCTTAATTGAACTTGTGTGAAATAAACTCAGAATGGTCTGCTGGCTGTTAAGTTGAGGGGATGTGAGAATAGACATAGGAACACTTGACGCCTGGCTTGTTTTTCTGTCATATAAAGGGAAATTGAAAGGCTTCTTGCTATTGTGACTTCTTTAGCTAACTCAGATTGAATAGGGATTACCTGTCAATCAGGAATCAAAAGTCCAAAAGTGTAGCATGTGATGAAAGATGCTGTAGAATGCCTGCACATCTCAGTTGTACTGAAAGAACTTTTCAGATTGAGTTTAGCCTGCAATTTCATTTTACCAGCACTTTTATCTTCTGCTTGTTCAAGCGTATCAAAGCAGCATAAAAAGGGATGGTTAGGCATAagctttactgtgttttttgtttgattgttttttttcccattttatttTGGTGTCAAATCTAATATGCTTAAGTTTGGGTGGCTTAGGCAACACTTACAGAAGCTTGAAACTGACTTGATTGAGTGAGCAACTGTGTGATCGAGTTGACAGTAATTCACAGTAATGTGTTATTGATTTTTCCACAGgttttaatttcagatatttttttattgttatatttaatttctaatttctttgtAAATGGGTATATTTCTCCTAGTTTAGCATAAGACATTTTAGTAATATTTTCCAAATTCTTATGTATTTTGAATGACTGTGTTCAAAAGGCAAAACAaatactaaatgtattttactggtCTAGATCCCACAGGCATCTTAATTCTAAATGAtctcaaatgttttttattagaaactattttaattaatttaatttggaaTGATCGGAAAATTTCAATCAAATGTAATGATTGAAAAGCCTGTTTACATGTCTAACTGTGCCAGATCCACACACGTGGGACTGAAAGCTACACAGTCACACAGAGGATGTATAAAGCAAGAGCAACCATTTACTTTTTCCTACAGAATCACCTGTTCCAGCTTTAAATGTGttcatgtatacatatatacagcattCTTGACCACTGTTGTATTTCGGATGCACTTTACTTCttctacaaaaataatatattcagcTAGTCTTAAAATGGGATTATTAGATAGTTGACCCATAGTGTGACATAGTGGTTTCAATTGACTTGTGTGGAAAACAGGtccctgtttaaaaaaagatccCATAACTTGTCAATAATTCATTTGTCACAGACAGtgatgcaacattttttttgttatagaaTTGATAAACAGTCttgaaagaaaatcataattatttttatatgtgtcagtttaaactttattttctgtAAGATGCAGTGACTGTGCcttatttgtgtaaaaataacCTATAATAAACCCATAATCCAATGGATGTTAATAATGAA

Function

GO: NA

KEGG:

id description
K20175 ANKRD27; ankyrin repeat domain-containing protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101483 lncRNA downstream 45545 20794484 ~ 20794959 (-) True G75295
TU101478 lncRNA downstream 92425 20747698 ~ 20748079 (-) False LOC103032014
TU101461 lncRNA downstream 94793 20622641 ~ 20745711 (-) True LOC103032014
TU101464 lncRNA downstream 94793 20622641 ~ 20745711 (-) False LOC103032014
TU101473 lncRNA downstream 271147 20568847 ~ 20569357 (-) True G75286
TU101597 lncRNA upstream 49516 20912831 ~ 20914086 (-) True G75357
TU101612 lncRNA upstream 116087 20979402 ~ 20985652 (-) True G75366
TU101613 lncRNA upstream 122879 20986194 ~ 20986762 (-) True G75367
TU101673 lncRNA upstream 178792 21042107 ~ 21066403 (-) True G75419
TU101682 lncRNA upstream 198143 21061458 ~ 21063620 (-) True G75426
XM_007244269.3 mRNA downstream 92296 20632639 ~ 20748208 (-) False LOC103032014
XM_007244268.3 mRNA downstream 92296 20743913 ~ 20748208 (-) False LOC103032014
XM_022672308.1 mRNA downstream 586681 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA downstream 586681 20243366 ~ 20253823 (-) True LOC103029688
XM_022672304.1 mRNA downstream 633806 20192525 ~ 20206698 (-) False LOC103045029
XM_022672311.1 mRNA upstream 6372 20869687 ~ 20877379 (-) True LOC103032734
XM_007244272.3 mRNA upstream 39763 20903078 ~ 20905520 (-) True LOC103033388
XM_007244273.3 mRNA upstream 45564 20908879 ~ 20910858 (-) True LOC103033709
XM_007244278.3 mRNA upstream 60423 20923738 ~ 20928274 (-) False LOC103034889
XM_007244277.3 mRNA upstream 60423 20923738 ~ 20928274 (-) True LOC103034889
TU101364 other downstream 740254 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 808477 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 974522 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1767616 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1900040 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 32788 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 406814 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1593016 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3321254 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4050983 24914298 ~ 24920365 (-) True G76377

Expression Profile