RNA id: XM_022672326.1


Basic Information

Item Value
RNA id XM_022672326.1
length 3282
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC103047162
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21317532 ~ 21460874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctcactctctctctcactctctggctGTGGGAGCTCGATAACGGACGGCTCCTCACGctgttcctctcctcctcttccttctcctcctctcacacagctctgctgggtggtgtttcagtgttttaccGGGGTCTCGTGTCTCTCGCGCTCCTGCAGGAGGAGTGTGTTGGTGTTTTCTGAGGTGTGTCCTGGTGTTTAAGTTCAGTGGTGATGCGGAGTTGAACATTTCGGAATGTGTGAGACCTCGCTGGGTTGAAACACGACGGTACGGGATTCCTGTGCTGAACGCCTCGTTTTCTGGAAGAGCTTTAAAACATGGACTAATTTCAGCTTCGCCATGGGGTTACTTCAGTTTCTGCTCGCGTTCGGAGTGTTTTTCTTCTCCTCAGTTGTAGGTCTCGGTGTGGACCCTTCTCTCATCATCAGCGTGTTTCAGGATTTCAGCCCTGGAGCAGATTTCACGGGAGTTTCTCAGGTGCAGGGCTTCCACGACGAGTCCAGAGCCTTCCTCTTCCAAGGGTCCTCTAGGAATGTGAGAGTGCCGGAGGAGACGGCGCAGCGGATGCTGCAGAAACTGAGGGGGAAGAGCGAGTTCACCGTGGCTGTCACTCTGAAGCAGGAGCAGCTCAACTCTGGAGTCTTCCTGTCCATCCACCGTGCCGAGCAGAGGTATTTGGAGCTGGAGAGCAGTGGACAGAAGAGTGAAGTGCGTCTCCATTTCCAGACCAAAGGacagcagacacacacagagatctTCCCCTACACCCTCGCAGACAACCAGTGGCACAAAGTGTCAGTGGCCATCAGCGCCTCCCACGTCACGCTTTATGTGGACTGTAACAGGATCTACGAGAGAGTGGTGGCTGTCCCTCTCATGGACATCCCTGAAGATGCCTCCTTCTGGATTGGACAAAGGAACAGTGCACATGGCTTATTCAAGGGGGTGATGCAAGATGTTCAGATACTTGTGATGCCTCAAGgttacatcacccagtgcccagATCTAAATCGCactTGTCCAACCTGTAATGACTTCCATGGACTTGTACAGAAAATTATGGAACTCCAAGATATCTTGGCTAAAACATCCAGCAAGCTGTTACTGGCAGAGGAGAGAATGAACGGCCTGGATAATTGCTATTGTGAGCGGACGTGCAGCGTGAAGGGGGTGACCTACAGAGAGGACCAGGCCTGGACAGATGGCTGCAAGAACTGCACATGCACGAACGGGACGGTTCAGTGTGAAACCATTGTGTGTCCTCCCCTGGAGTGTCCGGATGGTTCAGTCCCTGCCTATGTGGCAGGAGAGTGTTGCAAGAAATGTCAGCCTATGTGTCTGTTTACTGGACAAGAGTTAGTGGAGGGAGACAAAAGAGCTGTGCATCACCCCACTGGACTGTGCCTACTCTATGAATGCAGGGGCCGCACCATGCACAAAGTCCAGAACAGCGACGAGTGCCCCGAGCTCAAATGTCCTGAGGCAGAGCAGCTGACTGTTTCTGACAGGTGCTGCAAAGTGTGCAGAGGCCATGACTTCTGTGCGGAAGGCAACACCTGCATGGAGCACTCAGACTGTGTGAATCTGGATGCCGGAGCGAGCTGCAGCTGCAAGGAGGGGTTCCGCTCTCTTCGGCCAGACAATGCGTACTGTGAAGATATTGACGAGTGTGCGGAAGGGAAGCATTACTGCAGAGAGAACACGATGTGTGTGAATACACCCGGATCCTTCATGTGCATCTGCCATACTGGATACATCCGCATCGATGACTACTCCTGCACCGAGCATGATGAGTGTGTGTCAGGACAGCACAACTGTGATGAGAATGCACtgtgttttaacactgtgggAGGACACAGCTGCTCCTGTAAACCTGGCTACACAGGCAATGGAACCATCTGTAAAGCTCTGTGTGATGGCCTGTGTCTGAACGGCGGCTCCTGTGTCTCTCCTAATACCTGTGTGTGCACGCAAGGCTTCACTGGGCAGAGGTGTGAGACAGATATCGACGAGTGTTCAGAGGGCTTTGTGGAGTGCGACAGTCACGCTACCTGTGTGAACCTGCCTGGCTGGTACCACTGCGAGTGCCGGGATGGATACCACGACAACGGCATGTTCACTGCCAACGGAGAGTCATGTGAAGACATAGATGAGTGTAAAGTGGGCAGAAGCACCTGCGCCAATGACACTATCTGCTTTAACCTGGATGGAGGATACGACTGCCGGTGTCCCCATGGACACAACTGTACTGGCGACTGTATCCATGACAACAAGGTGAAGCACAATGGGCAGATCTGGGTCCTGGACAACGACAGGTGCTCCGTCTGCTCGTGCCAAATGGGGCAGGTGATGTGCAGGCGGATGGTGTGTGACTGTGAGAACCCCACTGTGGATCTGTTCTGCTGTCCGGAGTGTGACCCGCGCCTCAGCTCTCAGTGCCTGCACCAGAACGGCCTGCTCACTTACGCCAGCGGAGACACCTGGACAGAAAACTGCCAGCAGTGCCAATGCCTGCAGGGAGAGGTGGACTGCTGGCCGTTGTCCTGCCCCCCGGCGGACTGTGACTTCACGCTGGTGCCTGAGGGTGAGTGCTGTGCCCGCTGCGTGTCGGACCCGTGCCAGGCTCACAGCGTCCGCAACGACATCACCAAGACCTGCGAGGACGAACACGGCATCACACGCTTCAGCGGCTCCTCCTGGCTCAAACACGGCACAGAGTGTACCCTCTGTCAGTGCAAGAATGGACATATCTGTTGCTCAGTGGACCCGATGTGCCTTTAGCTGCAAACCAGAGCACTAAAGGCACATGTACAGTCTTTCTCCATTTACCAGAAGCTCACCCTCACCACCCCGTCCCCAAACTACTTCTTTATACCAAatgcaaaatgtgtattaaacCAAACTGACGACAGAGAACCTCACTGTTCATATCTGCTACAGGAGGAGTTCATTTCTTCACACTGAGGCGAGACAGCTCATCTGATGTACTACTCTGTACAAAACGCTGTATACACTGGCATGACCACACTGGATGTTAAAAAGCATATTCTTTCATTTCTGAGTCGTTATGAACCTAGAAAAAGAAGTAGGCATTCTAGATAGTAAGTAAACGTTATTGTACTTCTCTTTCGTCACATTATGGAACTTGTCTATATTTTGTGATTCcataaataacacttttttgttacgctttctgtttttcttttcttttatttcacgGTTTTAAACGATTCTACCGCTTGCTCTTAACTAATGGTGAAATAAAgtatttccatttccattta

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101664 lncRNA upstream 79066 21236592 ~ 21238466 (+) True G75413
TU101656 lncRNA upstream 113509 21199287 ~ 21204023 (+) True G75405
TU101639 lncRNA upstream 121761 21190766 ~ 21195771 (+) False G75390
TU101637 lncRNA upstream 121761 21192663 ~ 21195771 (+) True G75390
TU101654 lncRNA upstream 169183 21147808 ~ 21148349 (+) True G75403
TU101852 lncRNA downstream 290052 21750926 ~ 21751248 (+) True G75577
TU101913 lncRNA downstream 571285 22032159 ~ 22032470 (+) True G75627
TU101970 lncRNA downstream 978156 22439030 ~ 22439325 (+) True G75664
TU102012 lncRNA downstream 1169320 22630194 ~ 22633409 (+) True G75689
TU102065 lncRNA downstream 1290661 22751535 ~ 22751999 (+) True G75734
XM_007244407.3 mRNA upstream 24209 21274942 ~ 21293323 (+) True LOC103046854
XM_022672324.1 mRNA upstream 24209 21279326 ~ 21293323 (+) False LOC103046854
XM_007244315.3 mRNA upstream 44501 21270738 ~ 21273031 (+) True LOC103044722
XM_022672323.1 mRNA upstream 52756 21250469 ~ 21264776 (+) False mov10l1
XM_022672320.1 mRNA upstream 130096 21100409 ~ 21187436 (+) True srpk2
XM_022672328.1 mRNA downstream 105494 21566368 ~ 21578864 (+) True LOC103047464
XM_022671923.1 mRNA downstream 183764 21644638 ~ 21745964 (+) True LOC103046961
XM_022672329.1 mRNA downstream 405101 21865975 ~ 21912295 (+) True LOC103047463
XM_007244324.3 mRNA downstream 433124 21893998 ~ 21912295 (+) False LOC103047463
XM_022672331.1 mRNA downstream 487681 21948555 ~ 21955139 (+) True LOC103022337
XR_002650259.1 other upstream 52756 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 220626 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 292404 21023256 ~ 21025128 (+) True G75383
TU101298 other upstream 1109610 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1784459 19527991 ~ 19533073 (+) False LOC103044129
TU102047 other downstream 1294278 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2026656 23487530 ~ 23487870 (+) True G75938
TU102363 other downstream 2454917 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 2571226 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 2797635 24258509 ~ 24260506 (+) True G76192

Expression Profile