RNA id: XR_002650263.1


Basic Information

Item Value
RNA id XR_002650263.1
length 4260
RNA type misc_RNA
GC content 0.48
exon number 27
gene id LOC103024007
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22442736 ~ 22574013 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtgTGCGTACACCACACACAGTGGATGGAGGCACAGTGCTTGCCTCTTGCATTTGGACAACTATTGGAATCTAAGGGGTTAACGCGAGGATTGCAGGTTCAGGCTAAAGAGGAGGAGACTTCCACAGCAGTGCTAAAGTAAAGGTGTTGGATTCTGAGATCTGCTGTGGTGTGAGTATCTGAAGAAGACGGTAGAGAAGACAGGACCCTGtGGTGGATGTTCTTGGGTAAGCTGCTCTGCTGTCCTGATTGAGGAGAGAGGCGGGACTAAGCTCTGTCTAAAGGAGGCCTATTGGTCACTTGCGCTGATGATGGACAGGTTGAGAGATTGCTggacgctgctgctgctgttgctttcCTTGGGTAATGTGGTCACGGCACTGGAGGTCCCTCTTGACCCAAAAGTTCTGGAAGGATTGCCACAGCCTCCAACCATAACCCACCAGTCTCCTAAGGACTACATTGTTGACCCTCGAGAGAACATCGTCATTCACTGTGAAGCTAAAGGAAAGCCTCATCCGAGCTTCTCGTGGACGAAGAATGGCATACATTTTGACATTGATAAAGACTCGAGAGTGAACATGAAGTCTCATTCTGGCACTCTGGTCATTGACATCAGTGGAGGGGAGAAGGCAGAGGCTTATGAGGGTGTTTACCAGTGCACTGCCCATAACGAGCACGGAACAGCCGTCTCCAACAACATTGTCATTCGACAGTCAAGATCCCCTCTGTGGTCCAAAGAAAAGATCAAACCATACGTCATTCAGGAGGGCACACATTTAGTGCTGCCATGCAGACCACCTGCAGGACTGCCGCCTCCCATCATCTTCTGGATGGACAACAATTTCCAGCGCCTTCCTCAGAGCCGCCGCGTCTCTCAGGGTCTGAATGGAGATCTTTACTTCTCCAACGTTGTGACGGACGATTCCAGAAGTGACTACATCTGTTACGCACGCTTCCCCCACACACAGACCATTCAGCAGAAGCAGCCCATCACCGTCCGCGTCCTCAACATGGATGCAATCAATGAGACAATGGCAGCTTATTTGAATGagactgatgatttttttggtGACGCCCCATCAGAGGAGAGACCCCCTATATTTATGGTTCCAGAAGGTTCTGTCAGCTCAAAGATGGTTCTAAGAGGACAGGTTCTGGAGATGGAGTGCATTGCTCAGGGACTccccACTCCAGAGGTCACTTGGAGTAAGGTCAGTGGCGAGCTCCCCACTAAGAGAGCTTCCTTCCAGAACTTTCAGAAAACACTGCGGATTGTAAATGTTTCTGAGGCAGACGCTGGAGAATACCGCTGCACTGCCAAGAACCGCCTGGGCTCCGTCCACCACAACATAAGAGTAACGGTGAAAGCTGCTCCGTATTGGATTACGGCTCCAAAAAATCTGGTTTTGGCTCCACTGGAGACCGGAGTGCTGACCTGCCGAGCAAGAGGCACCCCCAAACCCACCATAAGCTGGTCTATGAATGGAGTTTCCATTGAGAaTGCCGCTTCAGATCCCAGTAGGACAGTGGAGGATGACACCATTATCTTTACTCAGGTTCAGAGTGGATCGAGTGCTGTGTACCagtgtaatgcctctaatgaaTATGGATACCTGCTCTCCAATGCCTTTGTCAACGTCctggCTGAGCCTCCCAGAGTGCTCACTCCCCTAAATAAAGTCTACCAGGTCATTATGAACAAACCTGCTCTGCTGGACTGCGCCTCCTTCGGCTCTCCTCTACCAGGAATCACGtgGTTTAAGGAGAGTCGCTCCAGCGTTCTGCTTGGAGACCCTTATATGTTTCATGAAAATGGAACTCTAGAGATCCCTGTGGCTCAGGCCTTCAACAGCGGCAAATACACCTGCGTCGCCACCAACACCTTCGGCATCTCGGAGAATCATGTATACCTGGAGGTCAAAGAGCCCACACGGATCCTGAAGCAACCTGACTACAAGGTGGTCCAGAGGAACAGGGACGTGGTGTTTGAGTGTAAAGTGAAGCATGACCCCTCTCTCATACCCACCATGACCTGGCTCAAAGACAACGGAGAGCTTCCAGATGATGAGAGATTTATCGTGGACTCTGATAGTCTTACCATAAccgaagtgagagagagtgatgaaGGGACGTACACGTGCATCATGAACACCACTCTGGACCAGGACACAGCCAGTGCGCATCTCACTGTTGTTGAGGCCACCCCCACACCAGCGGTTGTTTACGAAAAACCAGATGCGCCTCGAGATTTGGAGCTGACGGATCCCGGAGCACGAAGTGTACAGCTCACCTGGATCCCTGGAGATGAGCACAACAGTCCGATCAAGAAGTTCCTCATTCAGTATGAGGATTCACTTCATGATAAGGACACTTGGCATAACCTGACAGAGGTGCCAGGCTCTAAGACTACAGCTCACCTCAAGCTGTCCCCGTATGTCCACTACAGCTTCAGAGTCTTGGCTGTTAATGAGATCGGCCACAGCCTGCCCAGCCAGCCCTCGCGCCAGTACAAAACCAACCCTGCAGCTCCTGATGAGAACCCCAGTGAAGTCAAAGGCATGGGCACAGAACATACTAATTTGGTGATATCATGGAAGCCATTAACGGGTCTTCAGTCCAATGGTCCTGACCTTCAGTATAAAGTCATGTGGAGGCAGATGAATGTGGACGAAGAGTGGAACTCTGCAACAGTGGCCAATGTCTCCAAGTTTGTGGTAGCTGGGACGCCCACTTTTGTGCCATATGAGGTGAAGGTTCAGGCTCTCAACCACTACGGCCACGGACCGAAACCAGCAGTCATCATCGGCTATTCGGGAGAGGACTTGCCAGGGGATGCTCCAGACAATGTGCGGGTTGTGGTTCTGAACAGCACTTTGGCTGAAGTGTACTGGGGACCAGTTTCACCAAAATCAGTGCGGGGAAAACTACAAGGCTACAAGGTATATTATTCGAAAGAAAGAAGTCTGCACAGGCACAATGGCCATGGTCACTCTCATCACATGGAGGAGCAGACCCTGACCTTCACTGGGAACAGGAGCCATGGCAAGCTCCCTGGCCTGCACCCCTTCAGCCTTTACAAGGTCTACGTTAAGGTCTTTAACGGCCGTGGAGAGGGTCCTGCTAGCATTAAACAGGAGTTTGAGACTCCTGAGGGAGTACCTGGCCGGCCAACATACCTCAGGGTAACTGACAGCAATCAAGACTCTCTAACTCTGGAGTGGGGTCCACCCCATGAGAAAAATGGTCGACTCACAGGATATAACCTCAAATACCAGTCAGTCAATAACACCAATGAGCTTGGCCGTTTGGAGGAGCTTACCGTGCCGGCCAATGAGACCAGCATCACTCTGCACAACCTCAAGTACAGCACGCGCTACAAGTTTTATTTCAGtgccaaaacacacaaaggaaCAGGCCCCAGCATTACTGAGGAGTTTGCCACAATAATGGACGGAGGTAAGTTGCTTGTGCTTTGACATAAAAAGGGGGCAATTAATCCACACTTTCTTCAGCACAGGATTTAAAAGCAACATCTTAATTAATACCAGACAAAAGGAAAAGGCTGCACACTGCTTTAATTACGTCTCAAAAAGGATTACAGTTTAAATTTGCTAATGCtttattgttttgcatgttataAGTTTGATAATTTTTCAGCACTGGCATGTCCTTTGTTATTCgcatgtttttaaagtattagaTTGGACCTTAAGTCTATCTTTGCTGGTAAAATCTCATAGCCGGTCATAAAATGATTGCTATTTGTTTAGCTTGATGAGTTTCTGTTTACAGGATGAACAAATCATACAAATTATGCATATTTtatcaaaaacacacagaaatataTTGGAGGAATTAGGTCTTGAAGACCTCTTCACAAAAGCCAATCTTCTGATATTTGTCCTTTTGTTACGTTTAACCCACTCTCAGTATTAGCCAgtccttttagtttttttcagttGCATAATGGTAGCGTTTCTCATTCTCGCTCAAAATGTGAGAATCGAGTAATGTACAGTCAGATCCATTTAGTATGTTGACACCATATGTGTAATTTTGCCTTTGCGGACACCactttaaatagattttatttaagctttaaTTCCAGATGGTTTAACTAAAATACTGATTTGGGAATACTgaacagcatttttttcttaCCCCCGTTATTTTTACAGACAAACATCATTGATGCTGTGAGCATCTTCTCTTTTCTAGTCCAGTGCACTCGTgtattgtgattaaaaattgtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101908 lncRNA downstream 448916 22005429 ~ 22007415 (-) True G75623
TU101909 lncRNA downstream 448916 22006015 ~ 22007415 (-) False G75623
XR_002650262.1 lncRNA downstream 454047 22001490 ~ 22002284 (-) True LOC111193108
TU101894 lncRNA downstream 454916 21941570 ~ 22001415 (-) True G75611
TU101901 lncRNA downstream 485243 21968705 ~ 21971088 (-) True G75618
TU102008 lncRNA upstream 72202 22585926 ~ 22617027 (-) True G75686
TU102106 lncRNA upstream 225780 22739504 ~ 22739793 (-) True G75771
TU102109 lncRNA upstream 237596 22751320 ~ 22751545 (-) True G75774
TU102113 lncRNA upstream 251201 22764925 ~ 22824298 (-) True G75777
TU102120 lncRNA upstream 260445 22774169 ~ 22780962 (-) True G75780
XM_022672333.1 mRNA downstream 35054 22290073 ~ 22421277 (-) True cntn1
XM_007244332.3 mRNA downstream 76230 22290073 ~ 22380101 (-) False cntn1
XM_007244331.3 mRNA downstream 310938 22051238 ~ 22145393 (-) True pdzrn4
XM_015604495.2 mRNA downstream 509388 21912524 ~ 21946943 (-) True LOC103022647
XM_007244321.3 mRNA downstream 865077 21578912 ~ 21591254 (-) True irak4
XM_007244345.2 mRNA upstream 77896 22591620 ~ 22627981 (-) True LOC103026605
XM_022672351.1 mRNA upstream 116463 22630187 ~ 22637125 (-) False LOC103026897
XM_007244346.3 mRNA upstream 116463 22630187 ~ 22633443 (-) True LOC103026897
XM_007244348.3 mRNA upstream 153099 22666823 ~ 22687468 (-) True LOC103027474
XM_022672350.1 mRNA upstream 153434 22667158 ~ 22687469 (-) False LOC103027474
TU101746 other downstream 1183314 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 1560155 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 2356081 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 2424304 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 2590349 19859694 ~ 19865982 (-) True G75100
XR_002650267.1 other upstream 1670845 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 2400574 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 2435320 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 2670485 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 2775126 25288850 ~ 25301768 (-) False rab3il1

Expression Profile