RNA id: XM_022672387.1


Basic Information

Item Value
RNA id XM_022672387.1
length 2578
RNA type mRNA
GC content 0.49
exon number 19
gene id myrf
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24802002 ~ 24860926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGATATGCTATAGGAatgtacacagaaaaaaaatccgGAAAGATAAATGGTGTGTTTGTTAAATCTGAGGCCTTAAAGGGCTTAAGCAGACTGAGAAGAGCGGGAGATGCTTTGCgactaatgctttaaaataatctGACAAAATAGaggacaaagataaaaaaaaacagatcttgTAATGGAGGAGAGGTCTTTCGTTCCTGTTTGTAACTACTACCACCACTTATGTCATGATATTAACAGCTCTTTGGAGCCAGCAAACATTGACACCAGTATCCTGGAGGAATACATCAGCAAAGAGGACGACAGCACAGACATCTGTTTTTCGGAGGTCCACAGCAACCCAGGGCCTAACTACTCATCCCCTCAAGCCGGAACGTCCTCATCTGGGGGGGTAGTGTGTGGAGTGAGCCCCCCCATTGCCCAACGTCAAGGCACTGCACCATCTCTGCACCCACCCTGCCAGAACCCATATCCCCCTCCTCCCCCACTCGGCCTCCTCAGACACAACCACCCCTGCCTGGGGCAACAGCAGGGCCAGCCCCATCAGCACcaccagcagatccagcagcagcagcaacagcacatCAAACCAGAACACTGCGCTCACTACACACCtggAACATTACCAGAGTCTCCACCAGACTCTAGCTCAGAGCCATACTCCCCCCAGCAAGTGAATGACCCGCACATGCTGAGGGCCATGACGCCTGAAAACATGTGTCACATGACCACCCCGCCTCCCATGCCCCCTCATGGTCACTATCCCAGCATGCATCGGGACATGTACCTGAAACCAGAGCCCCTGATTTCACAGTATCCAATTGGGCCGGCAACCACTGGAGGTGGAGACATACAACAGAGTCAGATGCTCCATCAGCTGCTACAACATCCACAAGGACaagaCATTCCCGCTCACCAAGCAAAGAAGAGGAAGCACTCAGATTCTCCCAACAGCACTCTCAATGCGCAAATACTTAGCGGCATTATTAAACAAGAACCAGATTGTACTGTCATCTGTTTTGAAGGTTTGATGCAGGACGCAGAAAACTCATATTTGGACCCAAACTATCAGTGCATTAAATGGCAGCCACACCAACAGAACAAATGGACTCAGCTCTACGATGCCAATGGCAAAGAACTcccgATGCCCACATACAGAGTAGATGCGGACAAAGGTTTTAATTTCTCCTTGGCTGATGATGCCTTCGTGTGTCAAAAGAAGAACCACTTCCAGGTCACTGTGTACATCGGCATGCTTGGAGATCCAAAATATGTGAAGACCAGCGAAGGACTGCAGCCAATAGACTGTTTTTACCTAAAACTCAATGGAGTCAAGTTGGAAGCAATGAACCAGACCATTAATGTGGAGCAGTCCCAGTCTGACCGCAGCAAGAGACCGTTTAAGCCTGTTCTGGTGACTCTGCCCCCAGAACAGGTGACAAAAGTAACAGTGGGTCGACTGCACTTTAGTGAGACCACAGCTAATAATATGAGGAAGAAAGGCAAGCCGAACCCTGACCAGAGgtactTCATGCTGGTGGTGGCTCTCCAGGCTCAGTCCCACAGCCAGAGTTACACAGTGGCGGCGCAGGTGTCTGAGAGGATTATCGTCAGGGTAACCGCTGCATCCAACCCAGGTCAGTTTGAGAGTGATAGTGAGGTGTTGTGGCAGAGAGGTCAGCTGCCGGACTCTGTCTACCACCACGGCCGAGTGGGCATCAACACTGACCGACCTGATGAGGCCCTGGTAGTCCACGGCAATGTAAAGGTCATGGGTTCCCTTGTTCATCCCTCTGACATCCGTGCCAAAGAGAACGTGAAAgagGTGGACACCACAGATAACCTGAAGCGGATCTCTCAAATGCGACTGGTGCATTACCAGTACAAGCCTGAGTTTGCTGCCACTGTGGGTATAGATAACACTGCAGAAACTGGAGTGATAGCCCAAGAGGTTCAGAAGATTCTTCCAGAAGCTGTGAAAGAGGGGGGAGATGTAGTTTGTGCCAATGGAGAGACCATCCCTAATTTATTGGTGGTGAACAAGGAGCGTATCTTTATGGAGAATGTGGGGGCAGTAAAAGAACTGTGTAAACTGACTGATAATCTGGAGACTCGTATCGATGAGCTTGAGCGCTGGAGCCGCAAACTTGCTAAACTACGACGCCTTGACAGCATGaagagcacagttagcggcAGCACAGTCAGTCAGTCAGGTAGTCACTTTAGCAGAAATGGGAGTGGACCACTTAAGAAGAAATCCGTCAAACCAGGAAGTAAGAGTGTGATTCCAGAGCAGAACTGCTTGAGTCACAAGTTCATGCAGGGCACCATCCTAGCCCTGGTCATCATCATGGCCTTCAGTGTCATCTCAATGTCAATACTGTATGTGCTAAACATGCATCAACATGGAAACGTAGCTGAAGTTGATGGGTCTCGCTCTGCTTTGGGCTCATCTCGCAAAGCTGTTTATTCATCTCCCAGAGAGGCCATGTCCACACTCCCTTCAGGTTCCAAAATACCCAATATGAATACAATAAAACCAATATAATTAactgaaatacagtatatagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102713 lncRNA upstream 93482 24582347 ~ 24710951 (+) False LOC111193114
TU102705 lncRNA upstream 105696 24632047 ~ 24698737 (+) False LOC111193114
XR_002650269.1 lncRNA upstream 105711 24696319 ~ 24698722 (+) False LOC111193114
XR_002650271.1 lncRNA upstream 105711 24696319 ~ 24698722 (+) False LOC111193114
XR_002650270.1 lncRNA upstream 105711 24696319 ~ 24698722 (+) False LOC111193114
TU102914 lncRNA downstream 60209 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 121039 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 123226 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 127528 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 418089 25279015 ~ 25279623 (+) False LOC103026466
XM_007235121.3 mRNA upstream 64350 24725144 ~ 24740083 (+) True fads2
XM_007235122.3 mRNA upstream 156884 24426129 ~ 24647549 (+) True LOC103028282
XM_007235123.3 mRNA upstream 402708 24361414 ~ 24401725 (+) False LOC103029007
XM_022671925.1 mRNA downstream 4864 24865790 ~ 24871366 (+) True LOC111193061
XM_022672403.1 mRNA downstream 12553 24873479 ~ 24898537 (+) False LOC111193110
XM_022672402.1 mRNA downstream 33148 24894074 ~ 24898537 (+) False LOC111193110
XM_022672401.1 mRNA downstream 33523 24894449 ~ 24898537 (+) False LOC111193110
XM_022672384.1 mRNA downstream 38110 24899036 ~ 24919450 (+) True LOC103024697
TU102670 other upstream 543927 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 766572 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 886830 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1316563 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 2031872 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 12474 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 12474 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 85862 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 323159 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 433575 25294501 ~ 25296468 (+) True G76464

Expression Profile