RNA id: XM_022672393.1



Basic Information


Item Value
RNA id XM_022672393.1
length 2451
RNA type mRNA
GC content 0.49
exon number 20
gene id myrf
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24802002 ~ 24860926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GATATGCTATAGGAatgtacacagaaaaaaaatccgGAAAGATAAATGGTGTGTTTGTTAAATCTGAGGCCTTAAAGGGCTTAAGCAGACTGAGAAGAGCGGGAGATGCTTTGCgactaatgctttaaaataatctGACAAAATAGaggacaaagataaaaaaaaacagatcttgTAATGGAGGAGAGGTCTTTCGTTCCTGTTTGTAACTACTACCACCACTTATGTCATGATATTAACAGCTCTTTGGAGCCAGCAAACATTGACACCAGTATCCTGGAGGAATACATCAGCAAAGAGGACGACAGCACAGACATCTGTTTTTCGGAGGTCCACAGCAACCCAGGGCCTAACTACTCATCCCCTCAAGCCGGAACGTCCTCATCTGGGGGGGTAGTGTGTGGAGTGAGCCCCCCCATTGCCCAACGTCAAGGCACTGCACCATCTCTGCACCCACCCTGCCAGAACCCATATCCCCCTCCTCCCCCACTCGGCCTCCTCAGACACAACCACCCCTGCCTGGGGCAACAGCAGGGCCAGCCCCATCAGCACcaccagcagatccagcagcagcagcaacagcacatCAAACCAGAACACTGCGCTCACTACACACCtggAACATTACCAGAGTCTCCACCAGACTCTAGCTCAGAGCCATACTCCCCCCAGCAAGTGAATGACCCGCACATGCTGAGGGCCATGACGCCTGAAAACATGTGTCACATGACCACCCCGCCTCCCATGCCCCCTCATGGTCACTATCCCAGCATGCATCGGGACATGTACCTGAAACCAGAGCCCCTGATTTCACAGTATCCAATTGGGCCGGCAACCACTGGAGGTGGAGACATACAACAGAGTCAGATGCTCCATCAGCTGCTACAACATCCACAAGGACaagaCAGCATTCCCGCTCACCAAGCAAAGAAGAGGAAGCACTCAGATTCTCCCAACAGCACTCTCAATGCGCAAATACTTAGCGGCATTATTAAACAAGAACCAGATTGTACTGTCATCTGTTTTGAAGGTTTGATGCAGGACGCAGAAAACTCATATTTGGACCCAAACTATCAGTGCATTAAATGGCAGCCACACCAACAGAACAAATGGACTCAGCTCTACGATGCCAATGGCAAAGAACTcccgATGCCCACATACAGAGTAGATGCGGACAAAGGTTTTAATTTCTCCTTGGCTGATGATGCCTTCGTGTGTCAAAAGAAGAACCACTTCCAGGTCACTGTGTACATCGGCATGCTTGGAGATCCAAAATATGTGAAGACCAGCGAAGGACTGCAGCCAATAGACTGTTTTTACCTAAAACTCAATGGAGTCAAGTTGGAAGCAATGAACCAGACCATTAATGTGGAGCAGTCCCAGTCTGACCGCAGCAAGAGACCGTTTAAGCCTGTTCTGGTGACTCTGCCCCCAGAACAGGTGACAAAAGTAACAGTGGGTCGACTGCACTTTAGTGAGACCACAGCTAATAATATGAGGAAGAAAGGCAAGCCGAACCCTGACCAGAGgtactTCATGCTGGTGGTGGCTCTCCAGGCTCAGTCCCACAGCCAGAGTTACACAGTGGCGGCGCAGGTGTCTGAGAGGATTATCGTCAGGGTAACCGCTGCATCCAACCCAGGTCAGTTTGAGAGTGATAGTGAGGTGTTGTGGCAGAGAGGTCAGCTGCCGGACTCTGTCTACCACCACGGCCGAGTGGGCATCAACACTGACCGACCTGATGAGGCCCTGGTAGTCCACGGCAATGTAAAGGTCATGGGTTCCCTTGTTCATCCCTCTGACATCCGTGCCAAAGAGAACGTGAAAgagGTGGACACCACAGATAACCTGAAGCGGATCTCTCAAATGCGACTGGTGCATTACCAGTACAAGCCTGAGTTTGCTGCCACTGTGGGTATAGATAACACTGCAGAAACTGGAGTGATAGCCCAAGAGGTTCAGAAGATTCTTCCAGAAGCTGTGAAAGAGGGGGGAGATGTAGTTTGTGCCAATGGAGAGACCATCCCTAATTTATTGGTGGTGAACAAGGAGCGTATCTTTATGGAGAATGTGGGGGCAGTAAAAGAACTGTGTAAACTGACTGATAATCTGGAGACTCGTATCGATGAGCTTGAGCGCTGGAGCCGCAAACTTGCTAAACTACGACGCCTTGACAGCATGaagagcacagttagcggcAGCACAGTCAGTCAGTCAGGTAGTCACTTTAGCAGAAATGGGAGTGGACCACTTAAGAAGAAATCCGTCAAACCAGGAAGTAAGAGTGTGATTCCAGAGCAGAACTGCTTGAGTCACAAGTTCATGCAGGGCACCATCCTAGCCCTGGTCATCATCATGGCCTTCAGTGTCATCTCAATGTCAATACTGTATGTGCTAAACATGCATCAACATGGAAACGTAGCTGAAGTTGATGGCTCTTTACATTCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU102713 lncRNA upstream 93485 24582347 ~ 24710951 (+) False LOC111193114
TU102705 lncRNA upstream 105699 24632047 ~ 24698737 (+) False LOC111193114
XR_002650269.1 lncRNA upstream 105714 24696319 ~ 24698722 (+) False LOC111193114
XR_002650271.1 lncRNA upstream 105714 24696319 ~ 24698722 (+) False LOC111193114
XR_002650270.1 lncRNA upstream 105714 24696319 ~ 24698722 (+) False LOC111193114
TU102914 lncRNA downstream 69613 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 130443 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 132630 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 136932 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 427493 25279015 ~ 25279623 (+) False LOC103026466
XM_007235121.3 mRNA upstream 64353 24725144 ~ 24740083 (+) True fads2
XM_007235122.3 mRNA upstream 156887 24426129 ~ 24647549 (+) True LOC103028282
XM_007235123.3 mRNA upstream 402711 24361414 ~ 24401725 (+) False LOC103029007
XM_022671925.1 mRNA downstream 14268 24865790 ~ 24871366 (+) True LOC111193061
XM_022672403.1 mRNA downstream 21957 24873479 ~ 24898537 (+) False LOC111193110
XM_022672402.1 mRNA downstream 42552 24894074 ~ 24898537 (+) False LOC111193110
XM_022672401.1 mRNA downstream 42927 24894449 ~ 24898537 (+) False LOC111193110
XM_022672384.1 mRNA downstream 47514 24899036 ~ 24919450 (+) True LOC103024697
TU102670 other upstream 543930 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 766575 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 886833 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1316566 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 2031875 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 21878 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 21878 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 95266 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 332563 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 442979 25294501 ~ 25296468 (+) True G76464

Expression Profile


XM_022672393.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_022672393.1 Expression in each Bioproject

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XM_022672393.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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