RNA id: XM_022672421.1


Basic Information

Item Value
RNA id XM_022672421.1
length 5093
RNA type mRNA
GC content 0.41
exon number 11
gene id rab3il1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25282789 ~ 25301768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTTATGTCACAGTTATGCTAGATTCTACATGGCTTGGtcaagaaatgaagaaaataatgCAGATCAGTATTGTTCATCACTAGgcAAATACAGCTACCTGAGAGCAATGGAAACCAGAACCAAGATTCAGAGGCCCTGACAGACACCTGTGGCTGTATTAATAATTCTCACTGGGAAAAAATGGATGCCTTTGAGGGGATTCATACTGTGCAgctctcctcttctcctccatcGGTGTCCAGATCAAGTCCAGGGTACGAGCTGCTGGTAACAGGCAGCTCAGGAATAGCAGTCTACTCCTCCCATACATTTTTTGGGAAAGATGACTTTTCAGATTGTCGAAGAAGCAAACACTGCAGAGTGAAAGAAGAGGGGTGTCCAGTTGGAAGGTTAATAGATCTGGAGCCTGAGCCAGACCTTGGAGTAGTGGTGAGAAGAGGACAAGGAGAAGCAATGCTCCAAGAAGAGGCAGGGGCCGAAGGAGGAGACGCCTACAATGTGTCTCGCCTGCGGAGCTCCTCTCTGGAGATCAGAGAGAAGGGCACGGAGTTCCTCCGAGAGCAGCTGGACGCAGCACAAAAGGAGCTGAAGATGAAGGGGGAAGAGTGTGAACGACTTTCGCATGTGAGAGACCAACTGGAACAGGAACTGGAGGAGCTGACTGCCAGTCTCTTTGAGGAGGCTCATAAGATGGTCCGAGAGGCTAACGTAAAACAGGCAGCAGCAGAAAAGCAGTTAAAGGAGGCTCAGGGCAAGATTGACGTCCTTCAGGCGGAGGTGTCTGCCCTGAAGACGCTGGTGTTGACATCCACTCCATCTTCCCCCAACCGCCAGCTCCACCCACAGCTACAGTCTACAGGCTCCAAAGCTGCCTCATCACGGCACACACGTCACAAGAGTGCTACCTTAACCCTGCCTCAGCTCCAGTCAGAGCCAACCACTGAGCCTACACACACCAGTCGGGAAGATAAGGAGCTGGACTCTGTATTATTTGCTGAGTTTCTGTCGTGGAGGGAGGCTCCGAGTTTGGACCGATCTTCTGCCTTCATCAGTCGCATCTACAGAGAGGACATTGGGCCCTGCCTCTCCTTCACACGCTCTGAAtTGTCTCAGTCGATTCAGAGTGCAGTGGAGAATAACTCTTTGACTATTGAGCCTGTTGCCATGACTACACTGCCCATAGTCAAAGCCTCAGCTATTGAATGTGGAGGCCCCAAGAAGTGCGCTCTGAGTGGGCTGTCCAGGCCCTGCCGACATCGCATTAAGCTTGGAGATAAGGAGAGTTACTATTATATCTCTCCTTCCAGCAGAGCTCGGATCACAGCAGTGTGTAACCTGTTTACCTATATCAGATACATTCAGCAGGGCCTGGTTAGACATGATGcTGAGCAGATGTTTTGGGAGGTGATGCGTCTGCGGAGGGAAATGTCTGTGGCCAAGTTGGGTTACTTCCCTACAGATGAAAGCTGAAGGACACCCTGGGCATGTTGCCATTCTGTACACACAGCAAGTTTGACAATAACATTTGATCTGACACAGACACTCGTTACTGCTCGTTACCAACATCTGTTAACGTTACGAGCCGAGCAGAAGGAACGCTCCAGCCCAAAGCAGAATCACAGCACAGTAGAAGAACAGCTCAGTGAGTGAAAAGATTTCTAAGCTGGTGTGCTACACAAGCAGTACCCGTCAGTATTATACTTGTATTTTAGTGACTAAACCAAGTAGACAGAATCGTCACAATCAGCTTCCACTACACTCCAGACCTCCAGAGCAAAAGTTCTGTGTAAATCTGAACTTGAACGTGTAAAACAGgcttttttgtactttattttgTCAGCAGTAAAATCTCAGAAATTCAGGTAAACAAACACAAGAACAGAGGAGCAGCACCTATTTCTCACCTTCGTCTTCTGCTCAGTCTTCCAGGTAAATTGACAGATGCACACTGGTGACCTTCCAAAGAGTTTACAGCTGTCAAAGAATGTTTGCCTCATTTTGATCTTGCTTCTGCCCTAACAAGCACTGCTCCACTTTCTCACCCAAGACGCACTGTATAGAAATGTTGCATGAGATACATTGTTAATGAGAGAGGGTACAAAATGTTTGGCACAGTTTATAGGTTATTTTACCCCACTATGTTAAAGCCAGGGCTGTATTTAGCTCTGCTAAAGAATTAGCCAATATGTGCCTTATTTAGGATTACTATAATGGATGTGTACTTACTTTTATTTAGGATGTCTACAAAACATTTGTACAGGGGCGTTCAGACTTGTACACAGATTCCCAGACATAGAACAAACATAATTATCGGCTACATTTATAGTCAATTTAGTAGACAATCAATGTTTACTGTCATtttgttcaaaaagaggcacaGAGAAACATAAAccactgatttattttaatctatttgaattatattaattaacttATAACCAACTTTATTTCATGTATATACCCCTCAATTTTATTCAAGATGccactggtcacaatcattaccacccgctgtgctgtccactgtgggtggtaatgatgtcTATGACATATCCCCAGTACAcctgtgacactgtggattgaggaaagTTAAATTCCTGCACAATGTTGAATATAGAAAGTCTCCTTCACCCGGCCCACACTATCAGTCCTTGCTTAAACGCTGACTGTTTACATCTTTATGCcttgagcacactggccagtgtttaacctcattCACAATATAACACCTCGCAACGTATGTAGATGTGAATATTTTCACGTTATACTCTGAAGTAACACTTCAATGGGTCTCATTTACCAACCATTCTTATCTTCTTATTGAGAAGaaatttcttttaaaacacagtcctacagttttcatgaatattCTGACATTTAAAAGGGTTTTCTCATTGGGGATTTGTTAAAGTAGAACTCTggagtaaaattgactttggttgaagtaaaacataatatagagtactaacctttattgaatagcccacctctgctctcccgcagctttccgtaatgttgtgctttttgcccgGCACTCTTTACAACGGGTGCTTTGGGACATCctcttgcccctgcagataaattgcggtttacacagttttacaggcttaaagtagctccatacCTCATTGGTaaaatccggagagccctgatatttaaaacgaggcacctGGAGATTAGGTTACGCTATGGGTAACctaacagtggtttttaataagcttcttgtgcacttttaaagttattaatgcttcgagttaaatgtcagggctttcCCGGAttctactttgagcctggataacggaataaaaagcaatttatctgcaggggcaagtgGATGCCCCGAAGCACTTTTTGTAAAGAGTTCTGGGCAAAAATTGTATCATCTTTTACTACActcaaagtcaatttcacaccggagttctcctttaagtttgCCATTATTCAGtagtttaaaaacacatcataaATCTGATGCAGATTTTTGGTTAGAACAGATTTATTATACAATTTGGAATTGTATAGTTGGAATTAGACTTTTTTGGAAGTTATTGATGAATGAGGCCCAATGTTGACATTTGTACTTTTATAAATTAGTCTTACAGAGGTTTAATGAACTACAGTTAGTTCAGAACAACAGTGAGCCTTCTTTGCAAATTCATACTTCTGCTATAGAAATAGCCGTTCAACAACACTTGACATTCCTCTGTGCATAAGCTCTTTCTGCCATCAGTAAATGTGTGGATTCGTAGCCATTTTTGTAACAAATTGTGATTTTTGTGCACAGTTACAGTGCAAAATGAACCTGTTGACAATCAATCTGTGTTTGAGCAAAACGGACTCCAGTGTAATATATGTACTGCACAAAGCCATGCAAACTTGAATACTTGTTTTAATAGATTTTGCTGTTTCACAACCAATCCCACCTCTAGGTTAATGTCAAGAATGAGACTGACATATAATACACTTGTcgacaaaaaataaacacactgtagGATTGATGCAAatttatgtaaatgattacaggtgtggtctgtaAAGGCACTGGGTATTCCCACAAGAGGATATAAAGGACATCCTTCTCCTAGATCCCAATACAAAAAAAGGCTCTCAGGGgatacttttgggtagtgtacttTCTGGTGAAAGATCGtggactgctagacatgccacTAGAATTTAACCCCATTGACAGATTTAGAGTTTGGTCTGGCTCTACAGGCCCATCTGTGGCCAAATTTTCTGAAGGAGGCCATACAGAACGTCTATGCCTGCATGCCCAACTCAGACGTGTATGAATTACTGAAGACAAATAAgagacttgagtagaagttgaagtgttttTTAAGCTCCAAACTTAAGTGgaagaactaaaatatttaacatttttgtatttaagcaATGCAGGTAGTTCATTCTAAAAAGTACTGAAAGGAAAAGTACAGTATTGAAGTTCTTACAGAAAGCAGTTAAAAGGTTTGAATATAATATTGCAGATCAGCTTAATCGCTTGTGTTGCACAGTGCTgaggagcttcatcaaacctgACAGTGCCATGAACCACTccgtataatactgtatattacttcagcagagtacagatacagcattttagtacttaagtgcAGTAGTGAAGTAGATAAACATTGTTACTTTACATCTCTGGGCCAACCATATTATCTTGTGTCCAGGCTAGAGGCAGCCTAACAGGGTACTAGAGTCTCCTTTCAGTTGTCCAATTTTCAATGTATACTTTAGGATCAATATAGTAATAACTTACAcaaattttcatttattttttctaacatctttactgtgtgtatttgttttttgtcaatgagtgttTGTCATATCAACAATGGACTTCATTTCtgtgtgaaatgtgaaatgttgCCTAACACTAGTTAGTTTGTATAAAACCCGAAAGCAACATTACATGTATAATTAATACAccatattttaaacatgtattcAAGTTTACATAATTAGACATTTTAACCCTTACTTATAAGCTGAACTGCcttgagagaggaggagaactCCTTACACTccataaatgaatgaatatgcAATAAAAGATTGAATGGTCTGAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103118 lncRNA downstream 44776 25236454 ~ 25238013 (-) True G76453
TU103094 lncRNA downstream 69763 25207830 ~ 25213026 (-) True G76438
TU103095 lncRNA downstream 69763 25207830 ~ 25213026 (-) False G76438
TU103096 lncRNA downstream 69763 25207830 ~ 25213026 (-) False G76438
TU103098 lncRNA downstream 69763 25207830 ~ 25213026 (-) False G76438
TU103285 lncRNA upstream 228056 25529824 ~ 25564430 (-) True G76570
TU103294 lncRNA upstream 294657 25596425 ~ 25596663 (-) True G76579
TU103301 lncRNA upstream 310357 25612125 ~ 25615351 (-) True G76585
TU103316 lncRNA upstream 335204 25636972 ~ 25645157 (-) False G76590
XR_002650275.1 lncRNA upstream 335304 25637072 ~ 25639133 (-) True LOC111193115
XM_015601831.2 mRNA downstream 181689 25013293 ~ 25101100 (-) True LOC103023960
XM_022672404.1 mRNA downstream 484173 24791192 ~ 24798616 (-) False LOC103025724
XM_022672406.1 mRNA downstream 484177 24791192 ~ 24798612 (-) False LOC103025724
XM_007235111.3 mRNA downstream 484321 24791192 ~ 24798468 (-) True LOC103025724
XM_007235113.3 mRNA downstream 484323 24791192 ~ 24798466 (-) False LOC103025724
XM_007235184.3 mRNA upstream 15358 25317126 ~ 25327553 (-) True mpi
XM_022671929.1 mRNA upstream 49757 25351525 ~ 25561947 (-) True LOC103047119
XM_022672425.1 mRNA upstream 313652 25615420 ~ 25631771 (-) True bbs4
XM_007235191.2 mRNA upstream 353997 25655765 ~ 25661625 (-) True adck2
XM_007231579.3 mRNA upstream 542849 25844617 ~ 25857522 (-) False mrps35
TU103036 other downstream 98320 25184209 ~ 25184469 (-) True G76424
XR_002650272.1 other downstream 332767 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 362424 24914298 ~ 24920365 (-) True G76377
XR_002650267.1 other downstream 1094587 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 2769065 22456331 ~ 22513724 (-) False LOC103024007
TU103672 other upstream 1561646 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile