RNA id: XM_022672443.1


Basic Information

Item Value
RNA id XM_022672443.1
length 6085
RNA type mRNA
GC content 0.52
exon number 35
gene id mon2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26515189 ~ 26570715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTCACACAGGCATTATGGGATCGCAGGCTTCGCTCCTGCCATGGAGAAATCGGGCAGCATGAAGCTCGGAGTCCAGGAGAAGCGGTGAATCAGCGCGAGCTCTGTGAGTCCCAGGCCGAGGCGGACTGGGATGTCAGCGTTATAAAGGCGCTGATCCGGCGGCCGGGTCTCTCCGCTGTGGAGCGCTCCTGCGGGCGGCAGCTGTGCGTCTGATTCGCCGGAGGTGGATCGTGTCGATGGCCGCCTGCGCCGCGGCTCTCAGCGCTGTAGTGTTTTTCCATTTAGGCCGGAGCGGGTTTTAGGActgcggcggcggcggcggcttTCCTGTTCCTCCTGGAAGACTGTATAGAGAGCGGGAGACCTGGGGAGGAAACATGTCGACCAGCAGCCCCGAGGCGGTGAAGAAGCTGCTGGAGAACATGCAGACGGACCTGCGCTCTCTGTCCATGGAGTGCAAGAAGAAATTCCCCCCAGTGAAAGAGGCTGCAGAATCTGGCATTGTGAAGATTAAGACCATTGCTGCAAGAAATACAGACATCCTTGCTGCTCTGAAAGAGAATAGCTCGGAGGTGGTGCAGCCGTTTCTTATGGGCTGTGGCACCAAAGAGCCCAAAATCACCCAACTATGTCTGGCTGCCATCCAGAGACTCATGTCCCACGAGGTGGTGTCAGAGgctGCAGCAGGaaacattattaatatgttGTGGCAGTTGATGGAAAATGGCCTGGAAGAGCTGAAGCTTCTACAGACTGTTCTTGTACTGCTCACAACCAACACAGTAGTGCACGATGAAGTCCTCTCAAAGGCGATCGTGCTGTGTTTTCGTCTCCACTTCACTAAAGACAACATCACCAACAACACAGCAGCAGCTACAGTCAGACAGGTCGTCACTGTGGTGTTTGAGAGGATGGTTGCAGAGGATGAAAAATTTAAAGGCATGGCAGAGCAGCCTCCCGCTGTGCAGGGCAACAGTAACCGCAGGTCTGTGAGCACTCTCAGACCGAGTGCTAAAGACGCCTACATGCTGTTTCAGGACTTGTGTCAGTTAGTGAATGCTGATGCCCCCTACTGGTTGGTGGGTATGACTGAAATGACTCGGACTTTTGGACTGGAGCTGCTGGAATCggttttaaatgattttccCGGAGTCTTTCTACAGCACCAGGAGTTCAGTTTCCTGCTGAAGGAGCGTGTGTGTCCTCTTGTGATAAAGCTCTTCTCTCCTAACATCAAGTTTCGTCagggaagcagcagcagcagcgctgcaTCTCCCGCCCCTGTCGAGAAGCCCTATTTCCCCATCTGCATGCGTCTGCTTCGTGTCGTCTCTGTGCTCATCAAGCACTTCTACAGCCTGCTGGTGACGGAGTGTGAGATTTTCTTGTCCCTGCTGGTGAAGTTTCTGGATGGGGAGAAGCCTCAGTGGCTCAGAGCTGTGGCTGTGGAGTCAGTACACAGGCTGTGTGTTCAGCCACATCTATTACGGTCTTTCTGTCAGTCGTATGACATGAAGCAGCACTCCACCAAAGTGTTCAGAGACATCGTCAATGCCCTGGGCTCCTTCATCCAGTCCCTCTTCATTGTACCCAGTGTGGGAAATGTCTCCTCTACCAACACACCCACAGGTGTTTCAGCGTCTAGTGCTCAGGCTTCAGCTCAGGGTGGAGCAGGGGCAGCAGGGAACAGTGGGAGTTTGACCACTCAGGCTGCCTTTGAGTACCGTGGCACCTGGATTCCTCTGATGACCGTCAGCGTGCAGGGCAGTGCCAAGGCCACCTATCTGGAGATGCTGGATAAGGTGGAGCCACCCTCCATCCCCGAGGGCTATGCTATGTCTGTGGCCTTCAGTGCCCTGCTGGACCTGGTCCGGGGCATCACTTCCATGATCGAGAGAGAGCTGGccaaagaggaggaagaggctgCAGCCAGGGAAGGTTCAGAGCCTGATGGCCCAGCTCAGAGCGAGAACACTCCACAGGAACCCCGTAATACTGTGTGTTCATTATTATACCTCTGCTACAGAACCCATCAGGTGTGGGAAGAGATGGTGAGTGCGTGCTGGTGTGGTCTGCTGGCAGCTCTTTCTCTCCTACTGGACGCCAGCACGGATGAGACTGCCACAGAGAACATCCTGAAGGCAGAGTTGACGATGGCGTCTTTGTGCGGTCGTCTGGGTTTGGTGACTCCGCGAGACGCCTTCATCACAGCCATCTGCAAAGCCTCACTGCCTCCACACTACGCTCTCACAGTCCTCAGCAGCAACGCAGCCAACCTCTCCAACAAAACGTATTCTATTCAAGGCCAGAATGTGCAGATTATTAGTCCGTCCAGTGAGTCTCATCAGCAGGTGGTGGCAGTTGGACAGCCCCTCACCTCACAACCTCAGGGCACTGTGGTGCTCACAGCCAAAAACATCCAGTGTATGCGGACTCTGTTGAATTTGGCTCACTGCCACGGGGCTGTATTGGGAACGTCCTGGCAGCTAGTGCTTGCTACCCTCCAGCACTTGGTATGGATTCTGGGTCTGAAACCGGGAATTGGAGGAGCATTGAAGCCTGGCAGAGCTGTAGAGGGTCCCAGCACTGTTCTTACTACTGCTGTAATGACAGACCTACCAGTCATCTCCAACATCCTCTCCAGACTCTTTGAAAGCTCACAATACCTGGATGatgtctctctccatcacttGATTAATGCGTTGTGTTCCCTGTCCATGGAGGCTATGGAGATGGCATACGGAAATAACAAAGAGCCGTCTCTGTTTGCCGTCGCTAAGCTATTAGAGACAGGCCTAGTGAACATGGACCGCATAGAGATCCTGTGGAGACCCTTGACTGCACATCTACTGGAGGTCTGCCAGCACCCTAACGCTCGTATGAGGGAGTGGGGAGCTGAGGCCGTCACATCTCTCATCAAAGCTGGCCTTGCCTATAAGCATGACCCTCCACTGTCTGAGAACCAGAGGCTGCAGCTGCTGTTGCTGAACCCTCTGAAGGAGTTGTCGAACATACTGCATGCTGACATCAGGCAGAAGCAGCTGGAGTGTGTGCTGCAGATTCTACAGAGTCAAGGAGACAGCCTTGGCCCAGGATGGCCTCTAGTGCTGGGGGTCATCGGAGCCATCCGTAATGACCAGGGGGAATCCTTAATCCGAACAGCCTTTCAATGCCTCCAGTTGGTGGTGACAGATTTCTTACCCACCATGCCTTGTACGTGCCTCCAAATCGTTGTGGAAGTAGCTGGCAGCTTTGGTCTTCAAAACCAGGAACTAAACATCAGCCTTACCTCTATAGGGCTTTTGTGgaacatctcagactatttctTCCAACGGGGAGAGATCATCACAGAGGAGCTGGAGAAGGAGGAGGCTGTTCTGTTAAAGCAGGCCAGGGAGAAGGGAGAGCCTCTGAACAGACCCTTTCATCCAGCTCCCCCCTTCGACTGTCTGTGGTTATGCCTGTACGCCAAGCTGGGAGAACTGTGTGTGGATCCTCGACCAGCTGTCAGGAAAAGTGCTGGACAAACAATGTTCTCAACTATCGCTGCCCATGGAACCCTGCTGCAGCAGCCCACATGGCACATAGTGGTGTGGAAGGTGCTTTTTCACTTACTGGACTGCGTGAGGAGGTCATCCACCACTGCAGACAAGGAAAAGATTGAATCTGGAGGTGGAAACATCCTCATCCATCACTCACGTGACACCGCAGAGAAACAGTGGGCAGAAACCTGGGTGCTGACCCTGGCTGGCGTAGCTCGAATCTTCAACACCAGGAGATACCTGCTGCAGCAACTGGGTGACTTCTTCAAAGCCTGGGAGGTCTTGTTGGACCACATTCAATCAGCAGCGCTCAGCAAAAACAACGAAGTGTCCCTCGCTGCTCTTAAAAGCTTCCAGGAGATCCTCCAGCTGGTCACGCCCGTAAAAGACACAGACAAGCCAGATGCTCTGGGTGCAATGGACATTTCCTCAGTTCTCATGGACCCCCTTACAGCCTCGGGCCCTGGCAGACCCCTCCCTCGCTCAGACTCTCTCGCAGAGAGACTTGCTCAGCGCTACAGTGCCCAGCTTCAGCCCCCTCCACCTGGGGAAGAGCAGGACGACTCTGCCCTCTGGTGGTCAGCGTGGAGCACTTGGTACCGAACAGGGACTGAATGCACGAGGCCTCCGAGTGGCAACACAGAAAAACTAGCCTTTGTGCCCAGTCAGCCCTTTCTAACGGCGCTGATTCAGATTTTCCCTGCCCTCTACCAGCACATAGCGGGAGGCTTTAGCATGGAGGACTTGTGCAAGCTGGGGGTTATATTGCATGGAGCAGTATCTGTACCCATCAGCTCAGACGCTTCCCCGTTCATACTCCCCTCCTACACAGAGGCGGTGCTCACCAGCCTGCAGGAGGCTGTGCTCACAGCGCTGGATGTGCTGCAGAAGgcaATTTGTGTTGGCCCAGAGACCCTGCAGGTGATGTACCCTGCAATCTTTGAGCAGCTGCTGCAGTTTGTTGAGTTCTCTTGCAAACCACCGCAGTATGGCAAAATGGAAACCAAGCATGTGGCTAATGCTAAATATAATCAGATCCAACTGTTTGCACCGGCAGAATGGGTGGCCTTAAACTATGTGCCATTTGCTGAGAGGTCTCTAGAAGTGGTGGTAGACCTGTATCACAAAACCGCTTGCCACAAAGCTGTCATCAATGAGAAAGTATTACAGAGCATCATTAAGACTCTCAGGATGCCCTTAGGGCTGAAGTATGCATGTCCTGCAGAGAGCACCTGGAAGCTGGCAGTTTCCTCTCTGCTCAAAGTTCTCTCCATTGGCCTCCCCGTCGCCCGGCAACAGGCGTCCTCTGGCAAGTTCGACACCATGTGGCCTGAGCTTGCCAACGCCTTCGAGGACTTCCTCTTCACCAAAAGCACACCTCCTGATAACCTGTCCATTCAAGAGTTCCAGAAGAATGAAGCCGTTGATGTCGAGGTGGTGCAGTTGATCAGTACTGAGATTTTGCCCTATGCCAACTTCATCCCCAAAGAGTTTGTAGGTCAGATCATGACCATGCTCAACAAAGGATCCATCCACTCCCAGTCCTCCTCCTTTACAGAGGCAGAGATTGATATCCGGATGCGTGAGGAGTTCTCTAAAGTGTGTTTCGAGACTCTGCTACAGTTTTCCTTCAGTAATAAAGTGACCACACCACAGGAGGGCTATATCTCACGCATGGCTCTCTCAGTGCTGCTCCAGAGAGCTCAGGATGTTCTCCGCCGCTACGTCGAGGACGAGAGGCTCAGCGGCCGCTGCCCGCTGCCGAGgcAACAAGTGACAGAAATAATTTTTGTCTTAAAAGCTGTTAGCACGCTCATGGATTCCCTGAAAAAGACGCAACCAGAGAATGTGGATGGGAATACCTGGGCCCAGGTGATCGCTCTGTATCCCACGCTGGTGGAGTGCATCACCTGCTCCTCCCCTGAGGTCAGCTCCGCTCTGAAGGAGGCTCTGGGGCCTTTCAAAGACTTAATGCAGCCACCAGTGTCCAAAGTGCAGAACGGGGAGTCGTGATCTGATACTCCCTGCAAGCTTTTTATCCAACCAGAACCATGAATGtgactctctcacacacacactcacacacacagactctctCTCACCCCAGCACATTGTCTTGCTGTCATCATGGAAACCAAGATCCATCGTTCTGAGCTTTTTCTAACACAAGTTTAAATTAGAGTACGATTGGCTGCCTGGACAGTAACAATGTATTAACTGCTCCATAAAATTTGCAGTGTTCATTGTTTTTATGCCCCTCCCCCAATGCTTTTCTTTAACATGACAGGAGTTAATGTACATTGTGTGGTGATGTAGTGTTAATGATGTGACAAAAAAGACATATTTCCACATTTAATGATCTCAAGCCCAAGAATGGTTTCGAAAATACACAAATTAATAAAGTGGTCttcttttttgacattttctcaAAAGCAAATGATTTTATGCAAGATCTTACTGTAACATTCCATGCCATCTTTAGTCAGCTGGAGAAGGGATGTAccctgtgtgtgtaaaataaatgGTACAGTTCTATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103397 lncRNA upstream 368437 26145625 ~ 26146752 (+) True G76655
TU103387 lncRNA upstream 421996 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 801339 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 860192 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 868711 25640587 ~ 25646478 (+) True G76543
TU103610 lncRNA downstream 465 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 108925 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 113173 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA downstream 113353 26684068 ~ 26685628 (+) False LOC111193118
TU103729 lncRNA downstream 429479 27000194 ~ 27000955 (+) True G76931
XM_022672441.1 mRNA upstream 1168 26490616 ~ 26514021 (+) True LOC103027405
XM_022672442.1 mRNA upstream 3908 26490615 ~ 26511281 (+) False LOC103027405
XM_022672440.1 mRNA upstream 31008 26475507 ~ 26484181 (+) False LOC103027718
XM_007231587.3 mRNA upstream 31008 26475586 ~ 26484181 (+) True LOC103027718
XM_007231584.3 mRNA upstream 228747 26236780 ~ 26286442 (+) True LOC103026929
XM_007231189.3 mRNA downstream 321161 26891876 ~ 26958394 (+) True LOC103031630
XM_007231191.3 mRNA downstream 397921 26968636 ~ 26982403 (+) True LOC103032468
XM_007231192.3 mRNA downstream 415829 26986544 ~ 26999262 (+) True LOC103032770
TU103131 other upstream 1218721 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1330457 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1567040 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1634248 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile