RNA id: XR_002650221.1


Basic Information

Item Value
RNA id XR_002650221.1
length 535
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC111193064
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 283676 ~ 287042 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTTTTGCACCCTGACTTTATGAGGTATGTTTATGAAAGCTGGCTGAACAAAGAGGGCACATATCCTTCCACTGGATTCTTAATGCTCGTGTTCTCGCTGCATGTCTGTGATCAGGTGAGCGTATTTGGATTTGGTGCCAAAGAAGATGGACGTTGGCATCATTACTACGACAAAAGATACGCTGTTTTCCAAAGTAAAGGAAATCACAGAGGAAGCCTGGAATACAACATCACTCAGAAACTCTATGAGAAAAAGTGGCTCCAATTTTATAAAGGAACTTAGAATAAATCCAGaGTTTGTAGCTTGAAAGACCTGGAAGACCAAAAAGTATTGTCTTGGCGAGAGATCAATCAGACACCAGCATATCACACTACTGTATGCATCTGGTATAATGGTGctcttgtgaaaaaaaaactttttttcacttCAGCAGATGGAGCCTCATACCTTCTTCAGAAACCCTGCGGAAGACTGGTTGAAGCTGTGCAAATTAGAGtcctatgaaaaaaaatgtttactggTTTTCTGGGTT

Function

GO:

id name namespace
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94801 lncRNA downstream 100263 177044 ~ 183413 (-) True G70253
TU94729 lncRNA downstream 244645 37030 ~ 39031 (-) True G70190
TU94865 lncRNA upstream 104320 391362 ~ 391707 (-) True G70299
TU94883 lncRNA upstream 124543 411585 ~ 411826 (-) True G70316
TU94884 lncRNA upstream 133411 420453 ~ 420734 (-) True G70317
TU94891 lncRNA upstream 149195 436237 ~ 445526 (-) False LOC111193066
TU94889 lncRNA upstream 156771 443813 ~ 445526 (-) True LOC111193066
XM_022671930.1 mRNA downstream 87393 178319 ~ 196283 (-) True LOC103044579
XM_022671888.1 mRNA upstream 644975 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 688053 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 688053 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 701404 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 722844 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 2448826 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 3060758 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 3482119 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 4124906 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4595128 4882170 ~ 4884488 (-) True G71235

Expression Profile