RNA id: XR_002650234.1


Basic Information

Item Value
RNA id XR_002650234.1
length 937
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC111193079
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8784572 ~ 8793176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGGGAACTTTAACTTTGCATTTTGAGGCCCAGATGTGCTGCTGGTGCAATGAAACCTgacccccccaacacacactcaaacacacactcacacactctcacacacccatCCATGCTCCCCCAACCCTACCCACCCAGAGCTCTGCATTAAGACACATGTGGAAACAATTCACTCGATGCCCTGAGCAGGCAAGCCCTCAcactctctgacacacacacacacacacacatacatacacacacattcatgcaCATAACATATCCATAGTGCAGTCATTGCATATACATCACAAACCTGCCTGCACACACACGGCGCATGGGAGccacacacaggcacgtaggTAAACATACACCCCATACGCAAGCCGCTACGCTTCACTTCACGCCAATACATAAACACTCAGGCgcagaaacaagaaacacacacacacacacacacacacaccacatgctCATGTTCAACACACCATCGGACTCTGGtgaacactaacacactaaccacaACTTTACAATGAGATCAAATGAGAAAAGCATGTTAAGAACAATAGCTGGGTATTTatctccgttttttttttttttttcttcaggttgtgtgtgtgtgtgtgcgcgtgtgtgaaTGTTCAGAGGTTTGAGTCATCTCCCAGTAGACTGTGGTCCCTGATTGGACGCTATTTTTGTTGATGCCAGAGGTCAGAGGAGAATGGCCAGACTGCTTCGAGCTGATAGAATGACAACAGTAACGCAAATAACCACTCTTTACAACCTTGCAGAAAAGTATCTCTGAATGCACAACACGTCGAATTTTGAGGTGGATGGGCTTCAGCAGCAGAAGACCACACCGGGTGCCCTGACTCCTGTGAGCTAAGAATCggaaactgaggctacaattcGCACAGGCTCACCAAAATTGGACAATAAAAGCTTGGAAAAACATta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97390 lncRNA upstream 299809 8483923 ~ 8484763 (+) True G72209
TU97383 lncRNA upstream 346477 8437870 ~ 8438095 (+) True G72202
TU97373 lncRNA upstream 364267 8420064 ~ 8420305 (+) True G72192
TU97364 lncRNA upstream 383094 8401246 ~ 8401478 (+) True G72183
TU97356 lncRNA upstream 392095 8392261 ~ 8392477 (+) True G72175
TU97464 lncRNA downstream 162179 8955355 ~ 9036026 (+) False LOC103030246
TU97484 lncRNA downstream 296700 9089876 ~ 9090618 (+) True G72278
TU97469 lncRNA downstream 349186 9142362 ~ 9151966 (+) True G72263
TU97492 lncRNA downstream 434339 9227515 ~ 9227886 (+) True G72285
TU97515 lncRNA downstream 799131 9592307 ~ 9639931 (+) True G72305
XM_022672045.1 mRNA upstream 57937 8691950 ~ 8726635 (+) False LOC103028966
XM_007227994.3 mRNA upstream 57937 8691957 ~ 8726635 (+) True LOC103028966
XM_022672046.1 mRNA upstream 57937 8692321 ~ 8726635 (+) False LOC103028966
XM_022672044.1 mRNA upstream 97103 8674849 ~ 8687469 (+) True LOC103031395
XM_022672043.1 mRNA upstream 143224 8440137 ~ 8641348 (+) True spock1
XM_007228009.3 mRNA downstream 16852 8810028 ~ 8819533 (+) True LOC103033931
XM_007228007.3 mRNA downstream 33338 8826514 ~ 8857516 (+) False LOC103031822
XM_007228005.3 mRNA downstream 33338 8826514 ~ 8857516 (+) False LOC103031822
XM_022672071.1 mRNA downstream 36285 8829461 ~ 8857516 (+) False LOC103031822
XM_022672068.1 mRNA downstream 36286 8829462 ~ 8857516 (+) False LOC103031822
TU96877 other upstream 1899031 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 2245778 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 2746824 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 2747698 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 3278934 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 349723 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 1285403 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 3810176 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 4078308 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 5855653 14648829 ~ 14649551 (+) True G73533

Expression Profile