RNA id: XR_002650244.1


Basic Information

Item Value
RNA id XR_002650244.1
length 3014
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id LOC103036159
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15085780 ~ 15111364 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAACAGGATCGAAAGAGTCCACCGGATGAGAGCGGAAGTGTTGGACAAGGGACGCCGCACGCGGACGCTGCTCAGGGCTCGCAAACACGCGAGTGAACGGAGTGGCTGCTGGTTCACTCACTGCCCGGGAAGGTGGATCGATCAGTGAAGCTATACTGACTGGGAGAACGGGGGAGTCGACTCGCCCTTCCACAAACTTAAGTATCCGGTGTGTAATCCAGTTCTGAACGAGTTGCTGTTTGTGGGAAGCGGAGCTGCTTTCTGTTTATGCGAGCGTGTCCCCCGTGTCTTGTCGCAGCGCGCTGGAAACCACGTGGCCCTGTAGCTGATGTGAGAACGTGAAAGACTCTATTGTGTTGGCGTTCTCTGCTCCTGAAAGGTGTGCTGAGGAAAAGGGTACCCCAGTCTCCCCTGCCCCGACAAACCTTGGTCTCAACCTAGACCTCCGTTGCCATTCCTTACAGGAACCAGCTACGAGGCCTTCTGAAAAACCACCGTGTTTCTTTCCCGATGATGAATGTGTGAGATCCGCAGGATGGAGGTATCAGCAGAGTGGCGCCACAGCGTGCTATCCTTCTGACGCCCATGGCTCTGTGTGATCTTCAGTCGAGACGGACGGCTCGGTGTCTGTACCTGCAAACACAACCAGCTAGCAGGAGTTTGGAGACACATCAACGTAATGCTCAGCATAATGTTTCCGACTGAAAAGACTCCGAGGGGTAGAATTTACTGGAGGAACGAACATAAACCATGACCTACCTTTATTTCCCAAAAGTCTGTTCTTCAAAGACGCCACAATGAATGTGAGCTGATAGATGTCTACCTCTCTTCATTGGGAATTTATGAGCCTGATGACATGAAGACTCTCATCCCCAGTGCAGGGCCGAGTTCTGGTGACCTGTCCAGCGGCAGAAGCCACGTCTGgcATGTCTGGTGGTTGCTGGAGGAGGTGAAGCCGGCCACAGGGGTGTAGACAGTGCAGTTCAGGAGGAATAAAAGGACAATAAGGAGCCAGAGAGGAAGTGGAGTGGAAGGGTTGGGTGCCAGACTGCTGATCCTGACAGCTGTAGGACCTCAGGCTCTCCTCAGCAGGAGCTTCACACAGACATGAGGCAGACATGAAGTGAGTCTGAAGAAGAGAAGTGGGTCCCACTCGAGCTCCTCAGGCAAAAGCAGCCTTTGAGGGTGCCACATGCCTGCTTTCCATCCAAGTTCACTGGGGTAGAGTACACAGGAGAAGCCGACGTATGCAGGGAGACGTGCGGGGAGAGGGAAGACCAGCCGGCGATTCATGTATTAAGTGAAGGAGTGTGAAATAAAGAGCATTGTTTATTATGCAATACAGTTCAGCAATTATGGTGATATAGTTTAGGTTACACCTATAAACAAATTGAATTCCTGTATGAGATTTACAgtaatcttactgtaaaaatACGGAAAGTGGGGAAAAATGcaattctgtttatttgtgcCTTTCCATTTCAGATGAGGAAATCCACTCACAAATCCACTACATTTGCTGTGCTCCTGCTTTGCTAGGCATTATTCAAGTGCCAAACAAAACATATTCATCATTGTCTTTTAATCACATCAAAAAGAAATATAGTGCCACCCCAGGGTGTTGGCAGGAATAGACAGTCCTCTGTGATGTTATGGTTTCCAGTGCTGCCAAACAATCCAGAAAATTGACttagaataaatgtatttttaatatgataaCTCAAGGCTGCCCCAGTGAATACAGAGGCGCTCTTTGTCAATTGTTTTTTTAGAGATCAGTGCAGCACATTAAAGATAGGGAGCACTGTATGATACACAGCGATTAAGCCTTCCTGCACTGCATCCTCCTCTAGCTCTAGATcctctgtgtttttatgtacattttctaCCCACCCTTGACCCTAACCTAGTGCATGAGATAAGTGATGATATGACATCACATTAGCATGCAAAACGGATGCTGTATCACTGCGCACAATATTGCCACATCTGAGAAATTTTTCATATATTCTCATGCAGTATATCCCAACAGCGTATTCCAATAACACAGTAACCGTAAAATTAGAGCTGGTGTCTCAACTGAGTAGTGGATGTTGGAATTGCATATTTTTTAAGCTTCAgcagaaaactaaataaaataaaacaaaacaagccaATAAATGACAGGCTGAGCTGCCAGCAGCACAATGAATAGACCTCTATTATTCTCCAGATACATCTTAGTTTACGTGTGTGAGCACCAAATTCCATGATGCTCTGCTGACAGATCTTCAGAACTAatgtatcattatttttttccacttgaATTGTGGAAACGTGACTGATTATGTAATTTCCTGCTTTGTTCCTACTATACCTGTTTGTTTAGTCcaaacattctttttttgttgttttcatttttttgcaaaaaaataaaaaataaataatagatctGGCACAAAAACACCATTAATAGACAGTTTTGAGATGGCAGCTTTAATTAGCCAATCACCCTCAGCTACAGCATTATCCCTGCACCACATTGCCTTATCCCAGCCTTAACATGAGCCATTTGGAGATGACCTTAACCAAGACAAGATGAGCAATATCGCCAAGCTTAAGTGATTTCTTATATATTCTCATATATTCCAACAAGTTTGAAACACAGTAAATGTGGAATTAGAGCTGATTGTCTGATTTGAGATATGGATGTTAATATTCTTAGACTTcagcaaaacaataaaataaaataaaacaaaacaaaagccaATAAATAACAAGCTGAGCTGAAGCACAACAATTAGGCCTCTGTTAGTCTCTAAATACATCTTAGTGTACATAGTGACACAGCATCCGATTCAATCTATCAGTTTTTCTACTCGAACTGTGGAAATTAGCTAGATTAGATTAGTTCCTGCTTCCTTTCCTATTGTATCTGTTAATTTAGTCCTTATGTCCTtttttgtatatacagctctggaaaaaaatagagaccacttaaatatgatgagtttctttgtttttttcctaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99395 lncRNA downstream 56 15085494 ~ 15085724 (-) True G73697
TU99392 lncRNA downstream 4481 15081057 ~ 15081299 (-) True G73694
TU99364 lncRNA downstream 175100 14909107 ~ 14910680 (-) True G73679
TU99359 lncRNA downstream 180960 14902388 ~ 14904820 (-) True G73675
TU99358 lncRNA downstream 183487 14900668 ~ 14902293 (-) True G73674
TU99459 lncRNA upstream 12516 15123880 ~ 15125507 (-) False LOC103037068
TU99475 lncRNA upstream 77230 15188594 ~ 15189335 (-) True G73760
XR_002650247.1 lncRNA upstream 203273 15314637 ~ 15318087 (-) True LOC111193098
TU99585 lncRNA upstream 275315 15386679 ~ 15414613 (-) False LOC103040324
TU99596 lncRNA upstream 318783 15430147 ~ 15431307 (-) True G73862
XM_022672180.1 mRNA downstream 11011 15001175 ~ 15074769 (-) False LOC103035545
XM_022672179.1 mRNA downstream 11011 15001175 ~ 15074769 (-) True LOC103035545
XM_007228201.3 mRNA downstream 118479 14964498 ~ 14967301 (-) True irx3
XM_007228196.3 mRNA downstream 196025 14868932 ~ 14889755 (-) True rbl2
XM_022672181.1 mRNA upstream 12450 15123814 ~ 15214284 (-) False LOC103037068
XM_007228204.3 mRNA upstream 12450 15123814 ~ 15213323 (-) True LOC103037068
XM_007228214.3 mRNA upstream 116675 15228039 ~ 15290712 (-) True LOC103038669
XM_022672184.1 mRNA upstream 116675 15228039 ~ 15290711 (-) False LOC103038669
XM_022672182.1 mRNA upstream 116675 15228039 ~ 15290711 (-) False LOC103038669
TU99163 other downstream 540342 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 2464424 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 2520814 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 2520906 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 2520982 12564348 ~ 12564798 (-) False fbxo31
XR_002650248.1 other upstream 650400 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 2765662 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 2871383 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 3827810 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 3959574 19070938 ~ 19072888 (-) True G74838

Expression Profile