RNA id: XR_002650246.1


Basic Information

Item Value
RNA id XR_002650246.1
length 471
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC111193097
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15186249 ~ 15187955 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaggtatttatttacgtatgtttttatttttatttggaaatgcaaTTTATGTGGAAAATTGTTAAGTTGATTTCAACCAGTCAACGCCACTCTGATTTGCTGAGACCGCACGTCATCATAAACTCCACTCTGATATGCCGAGGCAAAACACGCTAAACATTTTTTGGCTGCTGcagtagctcagctcagctcagctcagctcattcagttcagctcgctcagctcagctccgctccggacCGGACTCAGCTGCCAAGCTATAAGATGGAGTCATGAAATGTGACGGGACAGCCACCGAGGACTTCGGAGCATCTCAAACATGCACCACAAAGACGTGGAGGACACACCGCTGTCTCTCAGGACCTAGAATCTTAATGAAAGTATAAtgatgttaagggaaggtgtagtggaaaggtgtgatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttaagggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99411 lncRNA upstream 59262 15123872 ~ 15126987 (+) True G73710
TU99239 lncRNA upstream 341585 14844445 ~ 14844664 (+) True G73598
TU99198 lncRNA upstream 509455 14675873 ~ 14676794 (+) True G73566
TU99158 lncRNA upstream 538687 14646443 ~ 14647562 (+) True G73532
TU99150 lncRNA upstream 547696 14637947 ~ 14638553 (+) True G73527
TU99416 lncRNA downstream 940 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA downstream 940 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA downstream 940 15188895 ~ 15189386 (+) False G73715
TU99527 lncRNA downstream 177688 15365643 ~ 15368383 (+) True G73799
TU99526 lncRNA downstream 178442 15366397 ~ 15367596 (+) False G73799
XM_007228203.3 mRNA upstream 105226 15075459 ~ 15081023 (+) True irx5
XM_007228198.3 mRNA upstream 275277 14891534 ~ 14910972 (+) True rpgrip1l
XM_007228199.3 mRNA upstream 275277 14891534 ~ 14910972 (+) False rpgrip1l
XM_022672178.1 mRNA upstream 275277 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228193.3 mRNA upstream 362915 14814804 ~ 14823334 (+) True hsd17b2
XM_022672185.1 mRNA downstream 120574 15308529 ~ 15351344 (+) True lrrk2
XM_007228205.3 mRNA downstream 121104 15309059 ~ 15351344 (+) False lrrk2
XM_022671918.1 mRNA downstream 167780 15355735 ~ 15357894 (+) True LOC111193056
XM_015601252.2 mRNA downstream 174813 15362768 ~ 15380544 (+) True LOC103041261
XM_022672186.1 mRNA downstream 174813 15362768 ~ 15380544 (+) False LOC103041261
XR_002650242.1 other upstream 265246 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 536698 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2288318 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2582825 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5104109 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 1098721 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3266896 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3894861 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4340036 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 5015664 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile