RNA id: XR_002650254.1


Basic Information

Item Value
RNA id XR_002650254.1
length 3124
lncRNA type inter_gene
GC content 0.38
exon number 6
gene id LOC111193101
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16831109 ~ 16887148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTcaaataagtttaatttctgTATGTGTAAATTCAGTGTATATATCACTACTCCACTCCTTACACATTTTAACAGATGCTACCTTGTACCGAGCTGCCTCTTGTCAAACATTTGGAgcactggagtgtgtgtgtatagatgtgcggtggagagattgagagacagaaagaaaacagatgTTCCGTGGGATTTGATTCACTTGACAATGGAAAGTCGGGGCATGAGTTCTGCACCAAAATGTTTGATGTTCTTCTCATCTGGAGCAGAGCGAGATGCATGAAAGTGGTGGTGGGTCTGGAGCCTACATGGAAACACTGGACACAAAGCAGGAATGACTCCTGGACATGTGCCCACAGGGCGGCTGGCCGGATCACTGATCTGCAGATGCCTCAGAGGAGCGAGTGACTCACAGACCCGGCTCATTTCTCCTAGCCTGACACCAAATGTTGCAGGGAACACTCATCATTCAGGAGGCTGAACAGGGATGGCTCTGTTACACTAGGTGATCAGTGTAAGGCAATGCCATTTGTCACCAAACCTAAGGAGAACGCTTTGTGGCTCTGTGGCTTCAATGGATGATGCAAAGGGGGGGAGCCGGAAAGCCCCCCGGTTCCTGGTCACACTTGGTAGCCCAAACCCTGGCCTCAGGTAGAGCACTCATCAGTCCCGCTGTTTCTCTCAATATGGACTCAATGAACTGGGGAGATTTGGGAAGCGTCCCATGGCACGTTAGCAGCAGCGGCTAttatcacacaccacacacacgtgcatatatacagtctatgcacacacacacatactaatttgcccacacacacacatattttcacaacacacacatggacagGTGTCGCTCAGTTTAACACTGATGGCCAGCTGTGCCTCATTCTGTAGATACAGCAGAGACGAGTGCCAGATGTGTCAGTTAAAACCCAGATGTGCTTAGTGTAAAAACACTCTAACTTAATgcatatctcactctctctctctcgcttagTGAGATCATTacagtgatttaaaaacagactgTTGTTAATGAGAGTAATGGAGTAACAATATTATTGAGAGCATAATATCTGCTTATGGATTATGTGGAACTCTCCGTGGTACTGAACCCCCTCCTTATTTGACTTCTTTCTCATTATATTGACTCATGCCTTATTCATATGATGATATGATCAAAATTTAtgattaaagtaacatttaaagtAATCTAATTCATATCTAAAATGAAAGCACTCACTGTTATGGCCTGAAAATCAATACACATCTGtataataaaaagttaatattgTGGTTCAAATGATTTACATACTTCTAaatctgtgtttaatgtttttaattaagcttgctataatgtgttactttattttacaaacATATACCCTTTGTTTAAATATCTCGTTTGCTGTTAGAAGTTGAGGAAAGTGAACTCAGTGACTCTTGGCTTCAAACAGATTCAGTAAGTAgttttctattttctgttttctttcttttttgctgcTGCACCTTTCTTTCGACAGTGCCTGCCCCCACCTGATGGCCAATCTCAGCAACTGCTGCTACTTTCTCTTTAAAATATGCAGCTTAAATTCCACTCCAGAGATAAGTGGTAACTTATGCAGTATAGATGCACAATACGTATGCATAACACATTTGTAATAGTTACATTTATCATAATTTTTCACAGCATATCTAAAAAAAAGCAGATgatatatgatttatttaattcCAATCTTTGATTGCAGAGAGTGTTTGTGTTATACTCTATGTCGGATCATTTACCTGTGgacaaaatctgtaaaaatatactgtatattgttaatattgcaattaggggtgggtgatatggccctaaaataatatcacgatatttcatgatattttcacGATAGCGATACTGttagcgatatgacaaaacactgatttaaaaaaagtattttaagaatacactactgcaacatgaaaattacattttactattgcaaacaatatgatatggcacatccctaactgTTTTaccagatttgtaacaaaagaattttatcagatttgtaacataagtcaatgattcagaatatctccatatatccagaactaaaataaaataaatgatgctagACAATTAggaaattagaacagtgtgtaccctgatgtgataattatggGTGGCTGATATTTCAGGGcataatatcgttcatgatattcaaaaatgttggtgatattattgtgtatgatatgatatggcacacccctaattgcaGTATACATATTGGAACAACAGCATATCGcaaattgtcatttttttctaaaatcaagCAGACCTAATATGCACTGACTAAGAACTTTATTAGGAAGACCTGTACACCtggaattacagtatataatcaGATGTTCAGTGCATATAATCAAGCAGATGTAAGCCTCCAGCTTCAGGTAATGTTTTAACCATCAAAATGGGAAACAAATCTCAGTGATTCATAAAATGACATCTCTTGCTGCCAGAAGGCCGTATTTGGGTATTTCTGTCACTGCTGATATACTAGGCAAATCAAGCAATTAGATTTTAGGGTCAAGATTAGGATTTGCCTGCTTCTAAAATTCACTACACTTGTCTCATAAGAGACAATGTCAACAGAGAGTCAGAAAATAGCTTTGGATTGGTTGGACTTGATGAAAAAGACTACAATTTCACAGATAATCACTCATTGTAATTGTGGTAATCAAATGAACAACATACTTTAGAACCTTAAGGTGAATAGgttacagcagcagaagatcatGCTGGGTTCCACTTCTTTCTGCCAAGAatagaaagctgaggctgcagtgcaTGGGCACTTACTCACCTAAAAATtgaaaactgaattaaacttgATTTCTGCCCAGAGATGATAAGATCAGCATGTGGCATCACAAGCATAAATCCAtgtaatgccttaaaaaaaccCTTTTGAATATTATACAGAATGGAAAAtgcataacattaaaacacttcTCAAAATGTAGAATTAGATGATGCAATCAGATTAACATGAAGCAGAATGTCAAAAAAGTGTCCAAATCTTGAGGTAATAAGGTGGCCCTTCACATTattaatgtttctaataaagtgcttaGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100125 lncRNA upstream 84714 16745859 ~ 16746395 (+) True G74294
XR_002650252.1 lncRNA upstream 269321 16556002 ~ 16561788 (+) True LOC111193100
TU100073 lncRNA upstream 308424 16522267 ~ 16522685 (+) True G74247
TU100067 lncRNA upstream 331771 16497035 ~ 16499338 (+) True G74241
TU99995 lncRNA upstream 360742 16467623 ~ 16470367 (+) True G74189
TU100190 lncRNA downstream 70509 16957657 ~ 16964382 (+) True G74339
TU100182 lncRNA downstream 101880 16989028 ~ 16999093 (+) True G74335
TU100185 lncRNA downstream 103100 16990248 ~ 17008539 (+) False G74335
TU100269 lncRNA downstream 589609 17476757 ~ 17476980 (+) True G74413
TU100330 lncRNA downstream 1074548 17961696 ~ 17963537 (+) True G74461
XM_007246488.2 mRNA upstream 32489 16796943 ~ 16798620 (+) True gcnt3
XM_022672206.1 mRNA upstream 36137 16748290 ~ 16794972 (+) True LOC103024840
XM_007246486.3 mRNA upstream 239346 16563973 ~ 16591763 (+) True LOC103042878
XM_007246482.3 mRNA upstream 342820 16474883 ~ 16488289 (+) True LOC103041748
XM_007246481.3 mRNA upstream 364252 16461892 ~ 16466857 (+) True dnaja4
XM_007246491.3 mRNA downstream 8167 16895315 ~ 16897931 (+) True foxb1
XM_022672212.1 mRNA downstream 797522 17684670 ~ 17806900 (+) True LOC103025470
XM_007246504.3 mRNA downstream 957953 17845101 ~ 17866128 (+) False tpm1
XM_007246503.3 mRNA downstream 957957 17845105 ~ 17865860 (+) False tpm1
XM_007246501.3 mRNA downstream 957958 17845106 ~ 17862699 (+) True tpm1
TU99974 other upstream 542780 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 1910106 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 2181558 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 3933178 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 4227685 12603352 ~ 12603424 (+) True trnar-ucg_4
TU100573 other downstream 1567703 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 2195668 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 2640843 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 3316471 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 4136108 21023256 ~ 21025128 (+) True G75383

Expression Profile