RNA id: trnaa-agc_15


Basic Information

Item Value
RNA id trnaa-agc_15
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnaa-agc_15
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6037676 ~ 6037748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96619 lncRNA upstream 1017 6032185 ~ 6036659 (+) True G71608
TU96551 lncRNA upstream 19573 5966554 ~ 6018103 (+) True G71567
TU96550 lncRNA upstream 23294 6012222 ~ 6014382 (+) True G71566
TU96537 lncRNA upstream 80657 5903400 ~ 5957019 (+) False LOC103043949
TU96474 lncRNA upstream 178312 5844617 ~ 5859364 (+) True G71518
TU96622 lncRNA downstream 48826 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 116133 6153881 ~ 6157418 (+) True G71613
TU96648 lncRNA downstream 307486 6345234 ~ 6345715 (+) True G71628
TU96785 lncRNA downstream 601918 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 618812 6656560 ~ 6661997 (+) False LOC111193077
XM_007253601.3 mRNA upstream 26275 6008561 ~ 6011401 (+) True LOC103031741
XM_022672012.1 mRNA upstream 49910 5962280 ~ 5987766 (+) True tmem173
XM_022672009.1 mRNA upstream 80661 5871090 ~ 5957015 (+) False LOC103043949
XM_007253600.3 mRNA downstream 234468 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 280572 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 280582 6318330 ~ 6344698 (+) False trappc11
XM_007253596.3 mRNA downstream 315891 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA downstream 315894 6353642 ~ 6372363 (+) False LOC103029834
trnaa-agc_14 other upstream 802 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 532038 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1057654 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 1057665 4956298 ~ 4980011 (+) True G71247
TU96736 other downstream 487893 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 843839 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3105151 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 4040831 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6565604 12603352 ~ 12603424 (+) True trnar-ucg_4