RNA id: trnar-ucg_4


Basic Information

Item Value
RNA id trnar-ucg_4
length 73
RNA type tRNA
GC content 0.58
exon number 1
gene id trnar-ucg_4
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12603352 ~ 12603424 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCTCGTGGCCTAATGGATAAGGCGTCTGACTTCGGATCAGAAGATTGCAGGTTCGAGTCCTGCCAGGGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98665 lncRNA upstream 38560 12564133 ~ 12564792 (+) True G73146
TU98662 lncRNA upstream 38560 12564346 ~ 12564792 (+) False G73146
TU98580 lncRNA upstream 45500 12557634 ~ 12557852 (+) True G73091
TU98553 lncRNA upstream 147348 12450486 ~ 12456004 (+) True G73082
TU98551 lncRNA upstream 154838 12445693 ~ 12448514 (+) True G73081
TU98715 lncRNA downstream 35821 12639245 ~ 12641822 (+) True G73177
TU98733 lncRNA downstream 60543 12663967 ~ 12669729 (+) True G73189
TU98736 lncRNA downstream 71562 12674986 ~ 12676348 (+) True G73191
TU98768 lncRNA downstream 344222 12947646 ~ 12952320 (+) False G73214
TU98771 lncRNA downstream 344222 12947646 ~ 12952320 (+) True G73214
XM_015601056.2 mRNA upstream 15809 12568837 ~ 12587543 (+) False fanci
XM_007228299.3 mRNA upstream 15809 12568838 ~ 12587543 (+) True fanci
XM_015601051.2 mRNA upstream 15809 12568842 ~ 12587543 (+) False fanci
XM_022672151.1 mRNA upstream 15809 12568843 ~ 12587543 (+) False fanci
XM_022672146.1 mRNA upstream 55674 12490584 ~ 12547678 (+) False LOC103039298
XM_022672155.1 mRNA downstream 76682 12680106 ~ 12715658 (+) False man2a2
XM_007228132.3 mRNA downstream 76686 12680110 ~ 12715658 (+) True man2a2
XM_022672154.1 mRNA downstream 76687 12680111 ~ 12715658 (+) False man2a2
XM_007228135.3 mRNA downstream 76687 12680111 ~ 12715658 (+) False man2a2
XM_022672156.1 mRNA downstream 76695 12680119 ~ 12715658 (+) False man2a2
TU97933 other upstream 2521212 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 3453933 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5717811 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 6064558 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 6565604 6037676 ~ 6037748 (+) True trnaa-agc_15
XR_002650241.1 other downstream 268060 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2045405 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2288110 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 3683252 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 5851427 18454851 ~ 18455197 (+) True G74649

Expression Profile