RNA id: TU10432


Basic Information

Item Value
RNA id TU10432
length 547
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G7651
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3566669 ~ 3572239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattgtcacgtctggtgctgttagctcctctgtcccttccacacccagctctaacggaggttctcaggtcaacaactacattacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacttcacctgcttcctccaggaagtcctgaatactgattactggcactataaaagagcactccacacaaacacccacgccgcgtattgtaggttctcctctttacaaagcgttctatatctcttgtctcagtttatcttgtgtatgaccttgcctttgttttctcgacgccgattattgcctttgcctctgatattggattgcttgtgtattacctggactgtgttttcactactgcctcttggattacctctgacattggatctctcgtgtatgaactctggactgtctctcgtttatggtatggttttgtctacattgctctggtttctggtgattaactgttttctgtatcaaccacgtattacatctgtttatttttataataaacatatatttttatcagtatctgcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10413 lncRNA upstream 31576 3533371 ~ 3535093 (+) True G7637
TU10367 lncRNA upstream 68813 3494371 ~ 3497856 (+) True G7603
TU10336 lncRNA upstream 169379 3395595 ~ 3397290 (+) True G7587
TU10337 lncRNA upstream 169379 3395595 ~ 3397290 (+) False G7587
TU10266 lncRNA upstream 302878 3259194 ~ 3263791 (+) True G7531
TU10437 lncRNA downstream 39545 3611784 ~ 3612934 (+) True G7656
TU10444 lncRNA downstream 45822 3618061 ~ 3621228 (+) True G7661
TU10446 lncRNA downstream 54529 3626768 ~ 3627535 (+) True G7663
TU10447 lncRNA downstream 55409 3627648 ~ 3627874 (+) True G7664
TU10448 lncRNA downstream 55723 3627962 ~ 3628681 (+) True G7665
XM_022672063.1 mRNA upstream 143417 3299338 ~ 3423252 (+) True LOC103029856
XM_015601611.2 mRNA upstream 405976 3144487 ~ 3160693 (+) True LOC103027967
XM_022672000.1 mRNA upstream 430468 3106191 ~ 3136201 (+) True LOC107196972
XM_022671994.1 mRNA upstream 464672 3065275 ~ 3101997 (+) True LOC103026748
XM_007234432.3 mRNA upstream 591301 2974013 ~ 2975368 (+) True LOC103026461
XM_022672131.1 mRNA downstream 1003 3573242 ~ 3587765 (+) True ifi35
XM_022677820.1 mRNA downstream 56448 3628687 ~ 3644274 (+) True LOC111194267
XM_022672150.1 mRNA downstream 69894 3642133 ~ 3656619 (+) True LOC103039250
XM_022672153.1 mRNA downstream 69894 3642133 ~ 3656619 (+) False LOC103039250
XM_015602934.2 mRNA downstream 168196 3740435 ~ 3779695 (+) True LOC103042028
TU10347 other upstream 114003 3449221 ~ 3452666 (+) True G7593
TU9947 other upstream 1032906 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 1507846 2050319 ~ 2058823 (+) False carm1
TU9686 other upstream 2221238 1340206 ~ 1345431 (+) True G7109
TU9540 other upstream 2864349 700764 ~ 702320 (+) True G6995
TU10606 other downstream 352046 3924285 ~ 3929003 (+) False natd1
TU10605 other downstream 352149 3924388 ~ 3929003 (+) False natd1
trnac-gca_1 other downstream 574397 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 576348 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_3 other downstream 578802 4151041 ~ 4151112 (+) True trnac-gca_3

Expression Profile