RNA id: TU10437



Basic Information


Item Value
RNA id TU10437
length 1121
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G7656
representative True

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3611784 ~ 3612934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GATTGGTCATGTCATTTTAATTTCCACATTTCCATACAAGTCTTCTCTGCTGACATCAAACTGAATGTTGAGACAAGTCTCAATGTACAAAAGTGACAAAATCTGAGTTGCAAAAATAGGCTGATTACTTTTCACCTGAACTTCACATTTCTGACATTTAGGCTTATTATGAAACAACCCTACTAAACTCACCTGACCTTATTTAAAGAGACCCTATCCTCACATTGTCTACTTATAGACTATGCATAAATTCATGAATCAAAAACAATCACTTAATTTCAAAAAATCTTTTACAGTTAAAGAGGAAGTTTAAGCTACTGTGCCTGGTCGCCATGTATTGTGCCTTAGTTCATAAAGCAGCCCAGAGTGAAACactctttataatctttatatgtATGTAAACATGTTGGATTTTGagacatcacaaaaaaacataggCAGGTCTTTTAGCTTAGTTCTGTTTTCATTTAAGTACATTTTGTGTGTCaaaaaattcagtttttaagGATATACTCCTTTTAAAATCAGGAATGTGAACAAGAACAGttcttaaaaaattacaaaacaattaATGATTGTCTATGCAATTTAGGTCAATATAATGTTTTTCAAGTAGATTTAAAAGGCACTTTAACTCATTTACTCATAAAATCAGGTCTAATTGTTATtctgtgttaaaatataaaccattattataaagttcccttttttttagatgtaaaCATTTAAGGCACATCCATTAGCAAGAATCAAAGAcacaagataagataagacaaaGCGAGGCATTAAAGATTAAGTGGCTCAGAGACAGGTTAAAGGAATAGATGGTTCTTACATGCTATTACGGCTAACTTGCTGATTACCTGAGTAATAGAACTAGTTAAATTCACTGTGCTCTTGTTTAcagttagcaacattagctttAATTGACCAAACTACTCTTTAAACTCCTGGGCCTCAGAGAAGAGTGCAGCAGGACAGTTAGGGCTTTTGGCTTTTGAAGCCGTAGTTGAGCTCGGCTCCTCCACTCAGAAGCAGGTCAATTCCAGTGCAGAAAGTGGCGTCAGCAGCGAGGAACAGTGCCATCAACCCGCTCTCCTCCTCAGTCCCCATCCGGCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10432 lncRNA upstream 39545 3566669 ~ 3572239 (+) True G7651
TU10412 lncRNA upstream 43979 3526630 ~ 3567805 (+) True G7636
TU10413 lncRNA upstream 76691 3533371 ~ 3535093 (+) True G7637
TU10367 lncRNA upstream 113928 3494371 ~ 3497856 (+) True G7603
TU10336 lncRNA upstream 214494 3395595 ~ 3397290 (+) True G7587
TU10444 lncRNA downstream 5127 3618061 ~ 3621228 (+) True G7661
TU10446 lncRNA downstream 13834 3626768 ~ 3627535 (+) True G7663
TU10447 lncRNA downstream 14714 3627648 ~ 3627874 (+) True G7664
TU10448 lncRNA downstream 15028 3627962 ~ 3628681 (+) True G7665
TU10456 lncRNA downstream 54042 3666976 ~ 3667945 (+) True G7672
XM_022672131.1 mRNA upstream 24019 3573242 ~ 3587765 (+) True ifi35
XM_022672063.1 mRNA upstream 188532 3299338 ~ 3423252 (+) True LOC103029856
XM_015601611.2 mRNA upstream 451091 3144487 ~ 3160693 (+) True LOC103027967
XM_022672000.1 mRNA upstream 475583 3106191 ~ 3136201 (+) True LOC107196972
XM_022671994.1 mRNA upstream 509787 3065275 ~ 3101997 (+) True LOC103026748
XM_022677820.1 mRNA downstream 15753 3628687 ~ 3644274 (+) True LOC111194267
XM_022672150.1 mRNA downstream 29199 3642133 ~ 3656619 (+) True LOC103039250
XM_022672153.1 mRNA downstream 29199 3642133 ~ 3656619 (+) False LOC103039250
XM_015602934.2 mRNA downstream 127501 3740435 ~ 3779695 (+) True LOC103042028
XM_007238985.3 mRNA downstream 127501 3740435 ~ 3779695 (+) False LOC103042028
TU10347 other upstream 159118 3449221 ~ 3452666 (+) True G7593
TU9947 other upstream 1078021 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 1552961 2050319 ~ 2058823 (+) False carm1
TU9686 other upstream 2266353 1340206 ~ 1345431 (+) True G7109
TU9540 other upstream 2909464 700764 ~ 702320 (+) True G6995
TU10606 other downstream 311351 3924285 ~ 3929003 (+) False natd1
TU10605 other downstream 311454 3924388 ~ 3929003 (+) False natd1
trnac-gca_1 other downstream 533702 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 535653 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_3 other downstream 538107 4151041 ~ 4151112 (+) True trnac-gca_3

Expression Profile