RNA id: TU10606


Basic Information

Item Value
RNA id TU10606
length 1742
RNA type TUCP
GC content 0.50
exon number 3
gene id natd1
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3924285 ~ 3929242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCTAGCGGTCAGGTGCGGCAAGTGCATCACGAGGCCGCGCATCAAAACATTGCCTGcgtgttctgattggctgaggcgAACACGTGGGCTCACAGCTGATTTTCCTTGGATGGAGTGTTTTTTTGCTGGGCTGTCTGAACGCCCTCAGTCCGCCTGGGCCAGCCCGGCTCTCAGCCTGCGTCTcggggctgctgctgctgctgctgctgctgctgctgctgctgttgctgtatCAGACGCAGCGCTCTCACCGACTTTTAGCGCaccgctgctccagcaccatGGCCCAGGCCGCCCAGATCAACGTCCTGGAGATCAGCAGCCCCATTCGGGTCGAGCACGACAAGAAGCGGCGGCAGTTCAGCATCCGTCTCAACGGTTCTTATGATAGAGCTGTGTTGCTGTATGAGTATGTGGGGAAGAAGACTGTGGACCTGCAACACACTGAGGTGCCAGATGCCTACAGAGGACGGGGCATTGCCAAGCATTTGGCCAAGGCGGCGATGGATTTTGTGGTTGAGGAAGACCTGAAGGCTCACCTGACCTGCTGGTACATTCAGAAGTATGTAAAAGAAAACCCCCACCCCCACTACCTGGAGCATATCATCCACTGAGGGAGGAAGATGAATAAAGGAAGTGACAGACTCTTGTTACTTATTGGATGCTTTGGATGGGCGGGGTGGGGGTGGCTGGGTATTCCTGATCGTTTTAACTGAGAGAGgttttgtgtgagagagaatggATACTAGAAAAGAAAGCATCAGCAGCTGTCCGGGCGATGTTATCAAAGCGTCTGCTTTGGAGCTTGCCTTGTGGATGAGGTGTACTATGGAGGGGATCAGTGGgcctctctttttctgcagcACTCAGGACACCATGGTTAGTAGATCTTTCAGCCAACCAGCCAACATGGAAGGGTCCACGGATAACACCCAAGACAACCATTGGAAACTGTCGGTTTTAGCTTGTCACGCTTCACATGCCTCTCCAGCCCCAATGCCTTCAGGTCCAGCGGTGcttatttacacacacagacttgcTCGCACTCACCAACATGCAAAAATTAATAACCTGTTCAAATGAAACTTGACGTGTGGGAAGCAAAGGTCACTGTAACAACATTACCAAATCGCCACTGTGTATTTTAAGTATGTTTCAGTCCGCGTGGCATGTTTTGTCACAAACCAGGGCCAGTAAAGTAGTTGAAGCTTCTGAGACAATCCCTCTCCTGCAGACTACAGGGCCGAAACCTCTCAGGACGGACACCTTAACACACACCGCTGCCCTTCAGCACAGGGAGCCTGTAAAATGTGCTTGGGGTGTGTTTGCATAACAGAAGCATGCGTGACTTATCTGTTGTCTGTAAGAGAGTAtgtgttatttttgtgtgtgtgtgtttgtgtgtgcgcgcgtgtgttaTTACCATACCTTCCCCATGGCCTTATCAGAGATGGTGACAGTGAAGGCCTCTAATGGCCTTTACTATCTCCACCAAAGCAGGGTGAGCTGGGTGCTCAAATAACAGCATCAAAATCTGCCCTGTCATTCAGACAGCCGTAGCAACACCGACGTCTCTGATGAGGATGATGGTTGTTGTCTCTAAACGTTTAGAGGCTTGCCATAGTCTGTTCTCTTTTGTTACTGTTGAAGATTGTGACGAAATAATGTCTGAAATTCATCacgtttttacacatttatgtACTCTATATCAATattcttgtttttaaataaagaaaggaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10590 lncRNA upstream 68039 3855203 ~ 3856246 (+) True G7772
TU10487 lncRNA upstream 127595 3787905 ~ 3796690 (+) True G7695
TU10456 lncRNA upstream 256340 3666976 ~ 3667945 (+) True G7672
TU10448 lncRNA upstream 295604 3627962 ~ 3628681 (+) True G7665
TU10447 lncRNA upstream 296411 3627648 ~ 3627874 (+) True G7664
TU10619 lncRNA downstream 12828 3941831 ~ 3944059 (+) True G7789
TU10628 lncRNA downstream 24727 3953730 ~ 3954709 (+) True G7795
TU10629 lncRNA downstream 24839 3953842 ~ 3954709 (+) False G7795
TU10627 lncRNA downstream 25129 3954132 ~ 3954624 (+) False G7795
TU10615 lncRNA downstream 127855 4056858 ~ 4063296 (+) True G7785
XM_007256307.3 mRNA upstream 5607 3913539 ~ 3918678 (+) True phospho1
XM_007256308.3 mRNA upstream 19536 3880530 ~ 3904749 (+) True znf652
XM_007256309.3 mRNA upstream 19536 3894477 ~ 3904749 (+) False znf652
XM_007256311.3 mRNA upstream 49337 3869409 ~ 3874948 (+) True phb
XM_007256313.3 mRNA upstream 49337 3869450 ~ 3874948 (+) False phb
XM_007256305.3 mRNA downstream 4161 3933164 ~ 3937220 (+) True tmem11
XM_007256302.3 mRNA downstream 52470 3981473 ~ 3989954 (+) True jpt2
XM_022672220.1 mRNA downstream 62977 3991980 ~ 4056487 (+) True mapk8ip3
XM_022672237.1 mRNA downstream 62977 3991980 ~ 4056487 (+) False mapk8ip3
XM_022672280.1 mRNA downstream 62977 3991980 ~ 4056487 (+) False mapk8ip3
TU10347 other upstream 471619 3449221 ~ 3452666 (+) True G7593
TU9947 other upstream 1390522 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 1865462 2050319 ~ 2058823 (+) False carm1
TU9686 other upstream 2578854 1340206 ~ 1345431 (+) True G7109
TU9540 other upstream 3221965 700764 ~ 702320 (+) True G6995
trnac-gca_1 other downstream 217633 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 219584 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_3 other downstream 222038 4151041 ~ 4151112 (+) True trnac-gca_3
trnac-gca_4 other downstream 222328 4151331 ~ 4151402 (+) True trnac-gca_4
TU11173 other downstream 1403062 5332065 ~ 5339048 (+) False hcrt

Expression Profile