RNA id: TU10649


Basic Information

Item Value
RNA id TU10649
length 1685
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G7810
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4071830 ~ 4095000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgatatttgtagtacttaaaaatatatatataaaaaatatatataaacataaataaataaacaactcaAAGAGAGGAGGAAGTTGAggaaattttatttggaaacaGGACGGGCTGGGCTGGTGTTCACCCATCAATGCAACCAGAAAACAGTAGTAACTACAGGTATAACGCTACACATGTTTAAAGAATGTCACCTTAGAATTAAAacatacacattcacactcACAAACGTATGCGTGCATACACTCACGACTGCACGCTCTGTAAACTTCCACACCAATATCTTGAAACAAACAGATCTCCATGGTAACCAATGATTACATCCAGAGGAACTCCAAGCACAAATTACCCACAGTGCAATTGACCTAcctatacagatatatatttctgatacatgtatttatatatatagatcaTTGGGATTTCAATAAAGACTTTGATCGATTTAAACAGTTTCATGAACATCTCAAAATCTTCATAAATAAATtggtgaaaaacaaaaaaaaaatatgcttctTTTCTTTACAGTTAGGTCCTCAACATCGGTGTAGTAATCAAAAATGGTCCCAAAAttgaaaaaaaggcaaaaaaaaaaagagcaaaacaaaaatgattCGTTTAAACATGaggaaaaatgacaaaataaaaacacaaacaaagaaGTGTAGtggtaggggggggggggggtcaagGAATCTACCTAAACACCAACAAGACAAGAGCACAGGCTACACAGCGCATTTACAAGGGGACGCATATCAGGCTACTATAATACACACAGAGAGGAGAGTTCGCACAGACAATTACTtgcccaccacacacacacatacatacttacatacatacgcacacttacatacatacacactcccCTCTCTTCGATTCTTGTGTTGTAGTTACTCAATGTGTTTCATTAGGTGGATGTCtgagttggtgtgtgtttgtagtgGGTGGTTGTCTgtattataataacaataataataataataattaatattttaggtAATATTTTACTTGGTGGAGAGAATAAGGGCAACAATAAGCCCGTACAGCCCCAACACTTCAGCGAAGATCAGAATGAGGATCATGCCCACAAAGAGGCGAGGCTGCTGGGCTGTGCCCCTGACTCCTGCATCTCCCACAATACCAATGGCAAAGCCAGCAGCAAGGCCACTCAGGCCCACACTCAGTCCTGCACCCAGGTGAAGAAAGCTCTTGTAGAGCGTAACCTTTTCTGAAATGTTGTTTGCAATGAGCACAGCCACCACCAAGCCGTAGATGGCTATGATACCCGCCATGACTACGGGGATGATGGACTTCATGATGAGCTCCGGCCTCATCACTGACATGGCAGCAATGCCTGTGCCACTCTTCGCTGTGCCATAGGCAGCACCCAATGCTGAAGACCATCGCTGCTGAGGCGCCCATCACCGCAAAGAAGGGGGAGTACTCGGGGCTTTCGGCGGACATTCTCCTGCTCGTTCAGGACACCGTACAGACCAACCACacggatagagagagaggggaggcgAAGGGCTCAAATGTCCTCCTAGTTGCTGATGCTGTGTCTATGTTGTTTAAGGCTGCGACTCGTCCACAGTGCCGCTGGCGTTAAAAGAGTCCAGGCTGCGAGTGCGGGAGTCGGTCACGAAGCGCAGAGACCCGGCGGAGATCTGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10653 lncRNA upstream 21409 4067154 ~ 4069092 (+) True G7812
TU10615 lncRNA upstream 27205 4056858 ~ 4063296 (+) True G7785
TU10628 lncRNA upstream 135792 3953730 ~ 3954709 (+) True G7795
TU10661 lncRNA downstream 6084 4101084 ~ 4101533 (+) True G7819
TU10666 lncRNA downstream 13636 4108636 ~ 4113617 (+) True G7821
TU10667 lncRNA downstream 13636 4108636 ~ 4113532 (+) False G7821
TU10664 lncRNA downstream 13732 4108732 ~ 4113532 (+) False G7821
TU10665 lncRNA downstream 13732 4108732 ~ 4113617 (+) False G7821
XM_022672216.1 mRNA upstream 34014 3991980 ~ 4056487 (+) False mapk8ip3
XM_007256297.3 mRNA downstream 149176 4244176 ~ 4250400 (+) True rpl19
XM_015607606.2 mRNA downstream 150502 4245502 ~ 4250400 (+) False rpl19
XM_022672372.1 mRNA downstream 168799 4263799 ~ 4285939 (+) True LOC103033979
XM_022672412.1 mRNA downstream 327754 4422754 ~ 4445870 (+) False LOC103026143
XM_007256293.3 mRNA downstream 336276 4431276 ~ 4445870 (+) True LOC103026143
TU10606 other upstream 161498 3924285 ~ 3929003 (+) False natd1
TU10605 other upstream 161498 3924388 ~ 3929003 (+) False natd1
TU10347 other upstream 637835 3449221 ~ 3452666 (+) True G7593
TU9947 other upstream 1556738 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 2031678 2050319 ~ 2058823 (+) False carm1
trnac-gca_1 other downstream 51636 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 53587 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_3 other downstream 56041 4151041 ~ 4151112 (+) True trnac-gca_3
trnac-gca_4 other downstream 56331 4151331 ~ 4151402 (+) True trnac-gca_4
TU11173 other downstream 1237065 5332065 ~ 5339048 (+) False hcrt

Expression Profile