RNA id: TU11048


Basic Information

Item Value
RNA id TU11048
length 447
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G8088
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4914464 ~ 4914910 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtggactttcagcgcacaacagggcacaaataagtaaagctaagcgctttcttttgcaaggcgttgtgttgaagcgagagtttgtacgcaaagaaagctccgcctacgggctgcgtttagacgtgcagtgtaagctcccccgtcgcagcaggtcagtcggaccgtacagtgtgtgcagatgaatcgcaggcgttgttcatacacgacaaacgattcaaacgtgctgtttgagctctccagaacgcatccgattaaaaaaatcgcacagtgtccgcctggcttaaatcacttgggtcctactttctctcgttccatatcaatgcgcgcagcgctgcaacctgacagctagcctacgtgtttgggtcgctttgtttacttctcgcttgttgacgcgtgcgcagctcgctgtcagaatgacgcgcactgatacgaaatgagagaaagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11039 lncRNA upstream 61398 4852867 ~ 4853066 (+) True G8083
TU10993 lncRNA upstream 111968 4752796 ~ 4802496 (+) False atp6v0a1
TU10905 lncRNA upstream 250099 4664114 ~ 4664365 (+) True G7992
TU10870 lncRNA upstream 411900 4501524 ~ 4502564 (+) True G7972
TU10867 lncRNA upstream 425266 4487180 ~ 4489198 (+) True G7969
TU11098 lncRNA downstream 174718 5089628 ~ 5108793 (+) True G8133
TU11100 lncRNA downstream 179051 5093961 ~ 5101259 (+) True G8134
TU11103 lncRNA downstream 179051 5093961 ~ 5101259 (+) False G8134
TU11119 lncRNA downstream 203138 5118048 ~ 5125168 (+) True G8141
TU11135 lncRNA downstream 228090 5143000 ~ 5143355 (+) True G8155
XM_022672525.1 mRNA upstream 6303 4854378 ~ 4908161 (+) True stat3
XM_022672532.1 mRNA upstream 6303 4854378 ~ 4908161 (+) False stat3
XM_007256270.3 mRNA upstream 77449 4806334 ~ 4837015 (+) True cavin1
XM_007256275.3 mRNA upstream 111963 4768684 ~ 4802501 (+) False atp6v0a1
XM_022672543.1 mRNA downstream 4563 4919473 ~ 5082727 (+) True LOC103033010
XM_022672548.1 mRNA downstream 4563 4919473 ~ 5082727 (+) False LOC103033010
XM_022672553.1 mRNA downstream 270624 5185534 ~ 5326573 (+) True LOC103045997
XM_007287820.3 mRNA downstream 421658 5336568 ~ 5339089 (+) True hcrt
XM_015607607.2 mRNA downstream 427723 5342633 ~ 5408162 (+) True kcnh4
trnac-gca_4 other upstream 763062 4151331 ~ 4151402 (+) True trnac-gca_4
trnac-gca_3 other upstream 763352 4151041 ~ 4151112 (+) True trnac-gca_3
trnac-gca_2 other upstream 765806 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_1 other upstream 767757 4146636 ~ 4146707 (+) True trnac-gca_1
TU10605 other upstream 985461 3924388 ~ 3929003 (+) False natd1
TU11173 other downstream 417155 5332065 ~ 5339048 (+) False hcrt
TU11320 other downstream 814012 5728922 ~ 5729500 (+) True G8287
XR_002650961.1 other downstream 1364059 6278969 ~ 6279690 (+) True LOC111194160
TU12331 other downstream 3680959 8595869 ~ 8596783 (+) True G9074
trnag-acc other downstream 3686357 8601267 ~ 8601338 (+) True trnag-acc

Expression Profile