RNA id: TU12198


Basic Information

Item Value
RNA id TU12198
length 425
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G8972
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8244449 ~ 8285944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttttttttttttttTTACAGCATtcatacttttatttacattctacttcTCTGAGGTGGCCTTACACAGTATACAACAGTGTATAACAGAGCTGTAGGAACGGCTGTTCCTCTGACTGACTGGAGCCGGGGGGAGATGATcgcagctggagcagactttgGGGTCTTTGTGTAAAAAggttaatgcaaaaaaaaaagtccccaTATTGTGTGATATTATACAGAGAGCCAGAGCACAGCCTGTGCTAGGTTATTATACAGCCACCCTTCTCCTTAAACGGGTTCTTATCTTCAGGCACTCCTTTAATGAGAGGATCTTCAGCTGACTGAGTTTcaacaaaatcacacagctCCTTTGCTGTTTTAGATACCTatgaggagagaaaaagagagagaggatcaGTAATCAGATCAATGAGGCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12182 lncRNA upstream 84836 8159112 ~ 8159613 (+) True G8957
TU12006 lncRNA upstream 111439 8132803 ~ 8133010 (+) True G8804
TU11997 lncRNA upstream 207448 8027842 ~ 8037001 (+) True G8796
TU11978 lncRNA upstream 223736 8020266 ~ 8020713 (+) True G8781
TU11986 lncRNA upstream 311528 7931133 ~ 7932921 (+) True G8788
TU12240 lncRNA downstream 87346 8373290 ~ 8374141 (+) True G9002
TU12241 lncRNA downstream 152902 8438846 ~ 8441148 (+) False LOC103040872
TU12300 lncRNA downstream 192378 8478322 ~ 8485936 (+) False LOC103021541
TU12310 lncRNA downstream 217270 8503214 ~ 8592870 (+) True G9056
TU12314 lncRNA downstream 268310 8554254 ~ 8554721 (+) True G9059
XM_007229946.3 mRNA upstream 141908 8077924 ~ 8102541 (+) True LOC103045652
XM_022673053.1 mRNA upstream 224415 7984538 ~ 8020034 (+) False gpatch8
XM_007232221.3 mRNA downstream 152842 8438786 ~ 8441829 (+) True LOC103040872
XM_022673163.1 mRNA downstream 178172 8464116 ~ 8481457 (+) True LOC103021541
XM_022673172.1 mRNA downstream 318261 8604205 ~ 8684262 (+) True helz
XM_022673244.1 mRNA downstream 555145 8841089 ~ 8885543 (+) False lmtk2
XM_022673237.1 mRNA downstream 555146 8841090 ~ 8885543 (+) True lmtk2
XR_002650961.1 other upstream 1964759 6278969 ~ 6279690 (+) True LOC111194160
TU11320 other upstream 2514949 5728922 ~ 5729500 (+) True G8287
TU11173 other upstream 2905401 5332065 ~ 5339048 (+) False hcrt
trnac-gca_4 other upstream 4093047 4151331 ~ 4151402 (+) True trnac-gca_4
trnac-gca_3 other upstream 4093337 4151041 ~ 4151112 (+) True trnac-gca_3
TU12331 other downstream 309925 8595869 ~ 8596783 (+) True G9074
trnag-acc other downstream 315323 8601267 ~ 8601338 (+) True trnag-acc
TU12385 other downstream 523757 8809701 ~ 8810467 (+) True G9113
TU12401 other downstream 633899 8919843 ~ 8930980 (+) False bri3
TU12402 other downstream 633899 8919843 ~ 8930980 (+) True bri3

Expression Profile