Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007232221.3 |
| length | 957 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | LOC103040872 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035898.1 |
| NCBI id | CM008301.1 |
| chromosome length | 34292151 |
| location | 8438786 ~ 8441829 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0005730 | nucleolus | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12845 | SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU12240 | lncRNA | upstream | 64645 | 8373290 ~ 8374141 (+) | True | G9002 |
| TU12206 | lncRNA | upstream | 134861 | 8281829 ~ 8303925 (+) | True | G8975 |
| TU12198 | lncRNA | upstream | 152842 | 8244449 ~ 8285944 (+) | True | G8972 |
| TU12182 | lncRNA | upstream | 279173 | 8159112 ~ 8159613 (+) | True | G8957 |
| TU12006 | lncRNA | upstream | 305776 | 8132803 ~ 8133010 (+) | True | G8804 |
| TU12300 | lncRNA | downstream | 36493 | 8478322 ~ 8485936 (+) | False | LOC103021541 |
| TU12310 | lncRNA | downstream | 61385 | 8503214 ~ 8592870 (+) | True | G9056 |
| TU12314 | lncRNA | downstream | 112425 | 8554254 ~ 8554721 (+) | True | G9059 |
| TU12330 | lncRNA | downstream | 152995 | 8594824 ~ 8595863 (+) | True | G9073 |
| TU12351 | lncRNA | downstream | 263603 | 8705432 ~ 8762647 (+) | True | G9088 |
| XM_007229946.3 | mRNA | upstream | 336245 | 8077924 ~ 8102541 (+) | True | LOC103045652 |
| XM_022673066.1 | mRNA | upstream | 418752 | 7984538 ~ 8020034 (+) | False | gpatch8 |
| XM_022673163.1 | mRNA | downstream | 22287 | 8464116 ~ 8481457 (+) | True | LOC103021541 |
| XM_022673172.1 | mRNA | downstream | 162376 | 8604205 ~ 8684262 (+) | True | helz |
| XM_022673244.1 | mRNA | downstream | 399260 | 8841089 ~ 8885543 (+) | False | lmtk2 |
| XM_022673237.1 | mRNA | downstream | 399261 | 8841090 ~ 8885543 (+) | True | lmtk2 |
| XM_022673268.1 | mRNA | downstream | 478000 | 8919829 ~ 8928199 (+) | False | bri3 |
| XR_002650961.1 | other | upstream | 2159096 | 6278969 ~ 6279690 (+) | True | LOC111194160 |
| TU11320 | other | upstream | 2709286 | 5728922 ~ 5729500 (+) | True | G8287 |
| TU11173 | other | upstream | 3099738 | 5332065 ~ 5339048 (+) | False | hcrt |
| trnac-gca_4 | other | upstream | 4287384 | 4151331 ~ 4151402 (+) | True | trnac-gca_4 |
| trnac-gca_3 | other | upstream | 4287674 | 4151041 ~ 4151112 (+) | True | trnac-gca_3 |
| TU12331 | other | downstream | 154040 | 8595869 ~ 8596783 (+) | True | G9074 |
| trnag-acc | other | downstream | 159438 | 8601267 ~ 8601338 (+) | True | trnag-acc |
| TU12385 | other | downstream | 367872 | 8809701 ~ 8810467 (+) | True | G9113 |
| TU12401 | other | downstream | 478014 | 8919843 ~ 8930980 (+) | False | bri3 |
| TU12402 | other | downstream | 478014 | 8919843 ~ 8930980 (+) | True | bri3 |
