RNA id: TU12360


Basic Information

Item Value
RNA id TU12360
length 364
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G9096
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8773504 ~ 8774905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTACTCACCTTGCCAAGAAGGGCGTCCAGATCAGCCGTGCCCGTGAAGGCACTGACCGCAGGACTCTGCGACAGCGTGGTGGCGTCCAGGTCGGCGTCCGGAGTAGTGACTGTCTTGGCCAGGCCGTCCACTGCTGCTTTCAGCTCGTACAGCTTTCGCATTATCTCGTCCTGACGAGCCTCCAGCGCTTTGAGAGCAGGATCCACCTCCCCattTACCAAAATTGAGGAACTATCCCACTCAGAAAAAGCTCCTCACTGCCTGCAGGACATTGTTTACTCTCCTAAAACTGAATCAGCTTCCCAAAAATAAACCTGCATCTGCGCAGACAGGACACTGCTCAATACACACACTGAGGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12351 lncRNA upstream 10857 8705432 ~ 8762647 (+) True G9088
TU12330 lncRNA upstream 177641 8594824 ~ 8595863 (+) True G9073
TU12310 lncRNA upstream 180634 8503214 ~ 8592870 (+) True G9056
TU12314 lncRNA upstream 218783 8554254 ~ 8554721 (+) True G9059
TU12300 lncRNA upstream 287568 8478322 ~ 8485936 (+) False LOC103021541
TU12372 lncRNA downstream 23955 8798860 ~ 8801890 (+) True G9108
TU12383 lncRNA downstream 30622 8805527 ~ 8805727 (+) True G9111
TU12384 lncRNA downstream 31992 8806897 ~ 8807677 (+) True G9112
TU12340 lncRNA downstream 41141 8816046 ~ 8818568 (+) False G9083
TU12343 lncRNA downstream 41141 8816046 ~ 8818568 (+) False G9083
XM_022673172.1 mRNA upstream 89242 8604205 ~ 8684262 (+) True helz
XM_022673163.1 mRNA upstream 292047 8464116 ~ 8481457 (+) True LOC103021541
XM_007232221.3 mRNA upstream 331675 8438786 ~ 8441829 (+) True LOC103040872
XM_007229946.3 mRNA upstream 670963 8077924 ~ 8102541 (+) True LOC103045652
XM_015605828.2 mRNA upstream 753470 7998991 ~ 8020034 (+) False gpatch8
XM_022673244.1 mRNA downstream 66184 8841089 ~ 8885543 (+) False lmtk2
XM_022673237.1 mRNA downstream 66185 8841090 ~ 8885543 (+) True lmtk2
XM_022673268.1 mRNA downstream 144924 8919829 ~ 8928199 (+) False bri3
XM_022673312.1 mRNA downstream 724928 9499833 ~ 9611812 (+) True LOC103034760
XM_022673318.1 mRNA downstream 856950 9631855 ~ 9720856 (+) True rai1
trnag-acc other upstream 172166 8601267 ~ 8601338 (+) True trnag-acc
TU12331 other upstream 176721 8595869 ~ 8596783 (+) True G9074
XR_002650961.1 other upstream 2493814 6278969 ~ 6279690 (+) True LOC111194160
TU11320 other upstream 3044004 5728922 ~ 5729500 (+) True G8287
TU11173 other upstream 3434456 5332065 ~ 5339048 (+) False hcrt
TU12385 other downstream 34796 8809701 ~ 8810467 (+) True G9113
TU12401 other downstream 144938 8919843 ~ 8930980 (+) False bri3
TU12402 other downstream 144938 8919843 ~ 8930980 (+) True bri3
TU12403 other downstream 144938 8919843 ~ 8931005 (+) False bri3
TU12405 other downstream 144938 8919843 ~ 8930980 (+) False bri3

Expression Profile