RNA id: TU13279


Basic Information

Item Value
RNA id TU13279
length 513
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G9787
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11837640 ~ 11842193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCATGTTGTCCTGAGGATAACCAGAGGGTCCTTGAGGAGGTAGAGGGTGCCCTGCAGATGGTGGCCCTGGGCTAGGACCCATCATTCCATGAGCAGAGCCAGGAGAAGGCCCAGGACTAGGACCCAGCATGGCCCCTGGAGAGGGCCCAGGGCCTGGAGAAGGGCCGGGCCGTGGGGTCCCTCCCATGGGGGGGTCCGGAGTGGACATCTCTCAGCAGAGCCGGGAGAGGTGCGAGAAGAAAAGCGATTATGTGCAATCAGCTTTCGCCGGTGAGCCAGTCCCCTGTTTTCTTCAGCTAagctatgctagctagctagaaacAAAGAGCAGCTCAGCCTGttcctccttttttttccctctcacCCCCTCCCTCCACCATCTGATGGCTGATTGTAGCGTTCAGCTCAGTAAGAACACTAACAGAGGCGCCATAAAGCGCTTCACTAGCGCCCCCTTCCCCCTGCAGGCCTGTGGGCAGGCACGCATGGGCTCCGCGCATGCGTAGAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13255 lncRNA upstream 77847 11755063 ~ 11759793 (+) True G9770
TU13200 lncRNA upstream 216232 11621002 ~ 11621408 (+) True G9730
TU13197 lncRNA upstream 253481 11582551 ~ 11584159 (+) True G9727
TU13173 lncRNA upstream 288509 11548182 ~ 11549131 (+) True G9708
TU13145 lncRNA upstream 331750 11499079 ~ 11505890 (+) True G9688
TU13364 lncRNA downstream 274824 12117017 ~ 12117343 (+) True G9851
TU13365 lncRNA downstream 309712 12151905 ~ 12152435 (+) False G9852
TU13366 lncRNA downstream 309712 12151905 ~ 12198169 (+) True G9852
TU13370 lncRNA downstream 381507 12223700 ~ 12224690 (+) True G9856
TU13375 lncRNA downstream 423585 12265778 ~ 12272921 (+) True G9861
XM_022673649.1 mRNA upstream 87431 11744412 ~ 11750209 (+) True LOC103046201
XM_022673643.1 mRNA upstream 205740 11623683 ~ 11631900 (+) True LOC103045592
XM_022673634.1 mRNA upstream 215298 11606124 ~ 11622342 (+) False hmgxb4
XM_022673630.1 mRNA upstream 215298 11606125 ~ 11622342 (+) True hmgxb4
XM_007234900.3 mRNA upstream 232146 11598303 ~ 11605494 (+) True ankrd54
XM_022673721.1 mRNA downstream 40538 11882731 ~ 11916082 (+) False LOC103023317
XM_022673715.1 mRNA downstream 40542 11882735 ~ 11917275 (+) True LOC103023317
XM_022673719.1 mRNA downstream 40543 11882736 ~ 11917275 (+) False LOC103023317
XM_022673726.1 mRNA downstream 40546 11882739 ~ 11917275 (+) False LOC103023317
XM_022673724.1 mRNA downstream 40547 11882740 ~ 11917275 (+) False LOC103023317
XR_002650436.1 other upstream 399308 11429073 ~ 11438332 (+) False luc7l3
TU12731 other upstream 1808258 10005524 ~ 10029382 (+) False LOC111193317
TU12403 other upstream 2906635 8919843 ~ 8931005 (+) False bri3
TU12402 other upstream 2906660 8919843 ~ 8930980 (+) True bri3
XR_002650462.1 other downstream 460334 12302527 ~ 12381348 (+) False tbc1d16
XR_002650463.1 other downstream 460334 12302527 ~ 12381348 (+) False tbc1d16
TU13435 other downstream 460372 12302565 ~ 12316505 (+) False tbc1d16
TU13546 other downstream 771498 12613691 ~ 12618197 (+) True G10003
TU13803 other downstream 1292408 13134601 ~ 13135118 (+) True G10200

Expression Profile