RNA id: TU13741


Basic Information

Item Value
RNA id TU13741
length 212
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G10145
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13045428 ~ 13045639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atctatctatctatctatctatctatctatctatctatctatcacacaTACACCACTACACCCTCAACACCACCACATACATCTCTACACcctcaacaccacacacacaccactacaccctcaacaccacacacacaccactacaccctCAACACCACCACATACATCTCTACACCCTCAACACCACCACATACATCTCTACACCCTCAACA

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13736 lncRNA downstream 7330 13029625 ~ 13038098 (-) True G10142
TU13737 lncRNA downstream 7330 13029625 ~ 13038098 (-) False G10142
TU13729 lncRNA downstream 20132 13025013 ~ 13025296 (-) True G10139
XR_002650964.1 lncRNA downstream 27952 13013337 ~ 13017476 (-) False LOC111194169
XR_002650965.1 lncRNA downstream 27952 13013337 ~ 13017476 (-) True LOC111194169
TU13747 lncRNA upstream 13136 13058775 ~ 13059046 (-) True G10151
TU13749 lncRNA upstream 13483 13059122 ~ 13059378 (-) True G10153
TU13753 lncRNA upstream 21482 13067121 ~ 13067739 (-) True G10157
TU13785 lncRNA upstream 61619 13107258 ~ 13107512 (-) True G10182
TU13787 lncRNA upstream 64454 13110093 ~ 13110294 (-) True G10184
XM_022673927.1 mRNA downstream 156447 12876778 ~ 12888981 (-) False emc10
XM_022673934.1 mRNA downstream 156447 12876778 ~ 12888981 (-) True emc10
XM_022673938.1 mRNA downstream 157143 12876778 ~ 12888285 (-) False emc10
XM_022673906.1 mRNA downstream 181574 12826988 ~ 12863854 (-) False LOC111193363
XM_022673985.1 mRNA upstream 47564 13093203 ~ 13096456 (-) False LOC111193378
XM_022673978.1 mRNA upstream 47564 13093203 ~ 13096456 (-) False LOC111193378
XM_022673974.1 mRNA upstream 47564 13093203 ~ 13095173 (-) True LOC111193378
XM_007235389.3 mRNA upstream 103731 13149370 ~ 13292878 (-) True LOC103034410
XM_022673993.1 mRNA upstream 103731 13149370 ~ 13165547 (-) False LOC103034410
TU13662 other downstream 228242 12813025 ~ 12817186 (-) True G10089
TU13252 other downstream 1367715 11677178 ~ 11677713 (-) False LOC103022087
TU13065 other downstream 1701166 11340140 ~ 11344262 (-) True G9632
TU12844 other downstream 2649948 10393462 ~ 10395480 (-) True G9469
LOC111194270 other downstream 2819938 10221156 ~ 10225490 (-) False LOC111194270
TU14251 other upstream 1195422 14241061 ~ 14243794 (-) True G10560
TU14289 other upstream 1573757 14619396 ~ 14656528 (-) False hsd3b7
TU14530 other upstream 1877326 14922965 ~ 14923959 (-) True G10767
TU14606 other upstream 2227116 15272755 ~ 15278437 (-) True G10808
TU14624 other upstream 2240206 15285845 ~ 15286735 (-) False LOC111188178

Expression Profile