RNA id: XM_007251099.3


Basic Information

Item Value
RNA id XM_007251099.3
length 3747
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC103030038
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15758756 ~ 15902433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggggggtgtatggatggatgggtggatggatggctggCTGGATGGGGATGCTGCACGGTTCAGAGAGGAGGAAAAACACGACCTGAATGAAAGCAGGGGGGTCTTCAGTAGTCTGTAGTAGACTGGTGTAGCTATTGGCTCGTTGTGGCTCATTAAGGAGGAGAGCTGTGGATTCTGAGGAAACAGAAAGGAGATGTTTCAGGTGTCAGAGGCTGGGCTGAGGGCAGGCTACTACTCGAGCATGGAGGAGAAGAAGTCAGGGGGGCTTCAGGAGGTCTACAACAGGGCAGGCTTTTAGTACATCGGCTCTGTCTCACTATTATTAGCCTTATTAGAGAATAATCACCCCACCAGCAGGCCTCCACCTCCAATCTCTGAGACGGACTCCAGACTTCAGTGAGAAACTGTAGCCAGATTCCCACCTTGTTGTAGTAATTTTTttggtgtgtatgtgcgtgtgtgtgtctgttagcacGCACGCCTCACACACAGGAAAGCCAGCCAGAGCCCAAAGCGAgctcCTCCTCCCCCCTCCCATTCGggttctctctctccacctccccCCCTCCCCGTCCTCCTCTATGCTCAGTTCGGTGTGTGTCTCCTCTTTCAAAGGGCGCAAGGGTGGGAACAAGTCGTCCAACAAAGCATGTTACAGCGCCGACATGACTTGTCCGTCAGACAGCGAGAAGATCGTGATCAACTGCGGGGGAATTCGGCACGAGACGTACCGCAGCACGCTCAAGACACTGCCCGGTACGCGGCTGTCCTGGCTCACAGAACCGGACGCCTTCAGCAACTTCGACTATGACCCAAAGTCGGATGAGTTCTTCTTCGACCGCCACCCCAACACCTTCGCCTTCATCCTCAACTACTACAGAACCGGCAAGCTGCACTGTCCCAGCGACGTGTGCGGCCCGCTGTTCGAGGAGGAGCTCGCCTTCTGGGGCATCGACGAGACAGATGTGGAAGCCTGCTGCTGGATGAACTACCGGCAGCACAGGGATGCGGAGGAGGCGCTGGACAGCTTCGAAACACCCGAGCCCGAAGTGCCCGAGGACGACCCGGCGCTGACCGGCGGCGCTGACGGCGATCTGAAGCGCCTCTGCCTGCAGGAGGACGGCAGGAAGCCCAGCTGGTGGAGCATCTGGCAGCCGCGCATTTGGAACCTCTTCGAGGACCCGTACTCATCCAAATATGCCAGGtacGTGGCATTTGGCTccctcctcttcatcctcatctccatctccacatTCTGCTTGGAAACGCACGAGGCCTTCAACACCATCTACAACAAGACAGAGAATGTGACGGTGGGAAACGTGACACGAGAGGAGGTGTCGTTTGAGGTGGTGACGGACAGCTGGCTGACCTACGTGGAGGGCATGTGCGTGATCTGGTTCACCATCGAGGTGTTCACGCGCGTCATCTTCTGCCCAGACAAGGCCGAGTTCTTCAAGAGCTCGCTCAACATCATCGACTTCGTGGCCATCCTGCCCTTCTACCTGGAGGTGGCGCTGAGCGGCCTGTCCTCCAAGGCAGCTAAGGACGTGCTGGGCTTCCTGCGAGTCGTCCGGTTTGTCAGGATCCTCCGAATCTTCAAGCTGACCCGCCATTTCGTGGGCCTGCGGGTCTTGGGCCACACGCTTCGGGCCAGCACCAACGAGTTCCTGCTGCTCATCATCTTCCTCGCCCTCGGGGTGCTCATCTTCGCCACTATGATCTACTACGCCGAGCGTATCGGCGCCGACCCCGAAGACCCCACGGCCAGCGCCCACACGGCCTTCAAAAACATCCCCATCGGCTTCTGGTGGGCCGTGGTCACCATGACCACTCTGGGCTATGGGGACATGTACCCGGAGACGTGGTCTGGCATGTTAGTGGGAGCTCTTTGCGCTCTGGCTGGAGTGCTGACCATCGCCATGCCCGTGCCCGTCATCGTCAACAACTTCGGTATGTACTACTCGCTGGCCATGGCCAAGCAGAAGCTGcccaagaagaagaacaagCACATCCCGCGGGCGCCGCAGCCCGGCTCGCCCAACTACTGCAAGCCGGACGCCCTGGCCATGGCCACCGCTTCGCCGCACAGAATCATGGGTAACGTAATTGGCGGCATGGTGGGCTCGGGCAGCATGGGAGGAGACTGTCCGTTAGCGCAGGAAGAGATCATTGAGATCAACCGAGCGGGTGTGTGGGACTCAAAGCAGAACGGGGACGCTGCAAACGCAGCCCTGGCTAACGAGGACTGTCCCACAATAGACCAGGTGCTGGGACCAGACGACAGGAGTCCAGCCACCGGCGGGCTGGGCTCTGGGACGGGGCGCGAGCGGTACCCACACGACCGCGCCTGCTTCCTCCTCAGCACCGGAGAGTTCCGCACCACAGACAGCAACGTCAGGAAAGTGCTGAGTTTCTGAACTGACCTCTTTCTCCCTAAAGAAGACTCCCCCTACCTCCCCTCCCACTCACACAGCATAGCAAATCCAGAGGCCACCTCCAGAGTCACCAAGAGACTGAGAGAGCTCACAgggaaaagagagggaaagagaaagagtggaaAAAGCGAGAAAAGAGTCCGGTGTGGTGCTCGTTAACATAGACGAAACGGGATCGCTCATCTCTCCGCTCATCGATGCTACCTCGGACTGGAACGATCAAGCACGCCTGAAAAATGTGGGACTTCACATGTTCTTCCAGACTGGATCACACTGGTTTCAGTCCAGCTCAGCTGTGCTTATCCGCATGCAATTTAATATCAATACAACTCTTGACTTTTCGTTTTAGCAAACCTGCCCGGGTTTTGTGACTGAGTAGAAAACTGGGCAGAAGATCATTAGAATTGGACCACTGTAAGGATTGTTTTACGAATCCCTTTGGCTCCTTTTGCATCTAGGCCAACCACGCAAGCTAAGGCCAGTACTGCTGTTTTGTGAATTGTGAAGAGCAAAGGATTGTGTGGAAAGATCTAGCTCTTTGCACTTTAACCACTTGCTTTAGGTCACAGATAACTTCATCCATGACTTCAATCATTCATGACTGGCATGGTTTTGTCCATGTTTGGTCCACCTTGATGGACCATCACATCTCTTGATTCAAACATCCTAAAGAATACCACTTGCACTGCAAACAAGGACAGATAAACTTCCATCGATCAGACTGATCCTCCAAAATCCCGTCTGAAGGTTGGGCGCAGTTCGTCTCCAGACCATCAGACAATCGCGACTGCGAGCACTACATGAAAAAGAACATcagcctctctttctgtctttcttctctttctttctctatctctcttcccACCCCAAAGCCCCCTCCACATCTCAGTGTTTCTCCTCCTCTGTAGATGAACTGCATGGCATGAAAGAAatgacgtaaaaaaaaaaacaaagcaggaATAAAACCTGAGGGAGGAGAGTAACAGAATACAGTGACCCGGGTGGAGAAACGTGAGATGTTTCTGATGGAGCAAAatcgtgcaaaaaaaaaaaaagaactgatggCTTCTTTCGTACGGATGGAGGAATGCTGCGTAGAACATCAGCCTGGATCAGGCGTGTCAGGGGATCAATGTAAACGAGACAATGCATATCATCTGGGGAAAGAGGACAAAGCGGCATAGTTTGCATCAAGGCAGCGATCGTGGAACCTGCAGAAGGACGGAGGGGGTTTTCCGGAAAGGCTGGGTGAACTTTGAACTGAACACTTacgaaaaaaataacaaagaaaagaatgaaaattgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14823 lncRNA downstream 73142 15668875 ~ 15689205 (-) True G10962
TU14612 lncRNA downstream 482419 15279453 ~ 15279928 (-) True G10811
TU14578 lncRNA downstream 673219 15087871 ~ 15089128 (-) True LOC111194139
XR_002650946.1 lncRNA downstream 673667 15087871 ~ 15088680 (-) False LOC111194139
TU14554 lncRNA downstream 742232 15019291 ~ 15020115 (-) True G10782
TU14858 lncRNA upstream 40925 15943357 ~ 15943893 (-) True G10996
TU14862 lncRNA upstream 48502 15950934 ~ 15951171 (-) True G11000
TU14852 lncRNA upstream 76805 15979237 ~ 15982555 (-) True strada
TU14853 lncRNA upstream 76805 15979237 ~ 15982123 (-) False strada
TU14875 lncRNA upstream 104503 16006935 ~ 16007794 (-) True G11008
XM_022677145.1 mRNA downstream 23534 15722985 ~ 15738813 (-) True aldh16a1
XM_015604340.2 mRNA downstream 48907 15711815 ~ 15713440 (-) True LOC103038450
XM_022677486.1 mRNA downstream 56540 15700494 ~ 15705807 (-) True LOC103044149
XM_007251090.3 mRNA downstream 78832 15681200 ~ 15683515 (-) True LOC103029096
XM_007251091.3 mRNA downstream 88726 15671756 ~ 15673621 (-) True LOC103029400
XM_022677405.1 mRNA upstream 7959 15910391 ~ 15928693 (-) True LOC103031937
XM_022677496.1 mRNA upstream 34090 15936522 ~ 15942544 (-) True LOC103032263
XM_007251104.3 mRNA upstream 50412 15952844 ~ 15964476 (-) True snrnp70
XM_007251106.3 mRNA upstream 78785 15981217 ~ 16004719 (-) False strada
XM_007251105.3 mRNA upstream 78785 15981217 ~ 16004719 (-) False strada
TU14624 other downstream 475612 15285845 ~ 15286735 (-) False LOC111188178
TU14606 other downstream 483910 15272755 ~ 15278437 (-) True G10808
TU14530 other downstream 838388 14922965 ~ 14923959 (-) True G10767
TU14289 other downstream 1105819 14619396 ~ 14656528 (-) False hsd3b7
TU14251 other downstream 1518553 14241061 ~ 14243794 (-) True G10560
XR_454920.3 other upstream 420601 16323033 ~ 16353834 (-) False LOC103036671
TU15837 other upstream 3206281 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 3336474 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 3883549 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 4096008 19998440 ~ 20082442 (-) True G11917

Expression Profile