RNA id: TU14947


Basic Information

Item Value
RNA id TU14947
length 1474
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G11065
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16270600 ~ 16272149 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacagtTATACCAGTAAAAGCTTGTTGTGCTTTTGGAAACCTTAACAGTCCAATAAGGTTTTCAGTTGAATTAAACACTCATTCACCTCCATCACATGGCTACGCCCACTCTGCACGAGCAGCATAGACAGATCCACACGAACCAGGAACTCTATAGAGAAAAACATTTCAGcagcttctctttctctcttgcgctttctctctcacgcgtgcgcacacacacacacacactaatcacGTTTCAAAAACAGTGACAGTTTATAATGATGATGTAGCATGTCTGACATATCCCActgtctcatacacacacactcctaaacacacACGATCAATCCAGCAGAGAAGACGGCTTTAAAATATCCACTTCATTAAATAAACAGCATTAAGGGCCCTAAAACACCAAGCAGACACTGAAGAAGCAGCTGAatttaaagctatttaaatCCACACCTTCCGATTCCAAATccaaaatatacaatacaatgccTATTCTAATTTGTCACTTTCAACTGAGAGAGTCGGTTTTATTCATTTGTAGGTGTATCTTATTATTGCTATAGTTATTACaaggtttaaaataaaaataatatgaatATTACACTTGGCTCAAAGTAACATTATGTGAGAATTTACATTTTGTGCTCCCTGGCTCCCCCTACTGTTGGAGAGTGGACAGCTGTACATGCATATTTTTTGATAAGCTGATGTATTCCGAAGCATCATCTCAAGTataagacagagacagaggtaTTTTTCCCCTGAAACATCAACCTGATTCTGAAGTTAATAAACCTGCTACATAATCCTGCATTTAACAGTGTCTCTTCATtaataaaaaccttttaaatgtgttcctttgtgaGCTGCTACATCGTTGTGCTACTGTGCTATTGTTTTAGCTTGTGTTCGGTTAGTTAATGTACTGTTACCCAAATGCCCACTCGTTATCAAATCCAGTTTTAAGGATACTTAAATAATGGATGCAAATATCATTCTTTATTATGGcttcatgtacagtatattataagCCTGAACACCTTCAGAGCTTAcgttaaatacactatattgcctaAAGTATCTGTTCGCCGATGATGTAAGGCTGCTCTTCACAAACTGTTCTTTAGCTAATCTGAAGAACACAAAgtctggaggtctgtagtgactCTCTCTGCATAAAGTTGGGAGACCTCTGTTTTTTTACGTCTTAcgtctttttttttacgttgACAGAGCAAAATTTTATGACTAggcttgttgcacaggtgcagcATCCTATCATGGTACCATGCTGAAGTTTGCTAAGCTCCTGAGAGCGACCAATTTTTTGAGGCTGCATTGGTGAGCGAATAAAGTGAATACTGAGTTAGCATAATTGCATTGCAGGAAGTACAGTGTCACATAaggcaataaaaacaaacatcatGCTACAGTATTTTTGCTGCTTGATACAAAAGAACAAAGTTGCACgattgt

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0032501 multicellular organismal process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14913 lncRNA downstream 45912 16169805 ~ 16224688 (-) True G11036
TU14914 lncRNA downstream 45912 16169805 ~ 16224688 (-) False G11036
TU14922 lncRNA downstream 125300 16145041 ~ 16145300 (-) True G11043
TU14890 lncRNA downstream 183867 16085618 ~ 16086733 (-) True G11017
TU14891 lncRNA downstream 185343 16084156 ~ 16085257 (-) True G11018
TU14952 lncRNA upstream 14978 16287127 ~ 16290485 (-) True G11069
TU14961 lncRNA upstream 18811 16290960 ~ 16304539 (-) False G11070
TU14957 lncRNA upstream 30556 16302705 ~ 16304539 (-) True G11070
TU14958 lncRNA upstream 30556 16302705 ~ 16304539 (-) False G11070
TU14962 lncRNA upstream 34939 16307088 ~ 16312001 (-) False G11071
XM_007251106.3 mRNA downstream 265881 15981217 ~ 16004719 (-) False strada
XM_007251105.3 mRNA downstream 265881 15981217 ~ 16004719 (-) False strada
XM_022677318.1 mRNA downstream 265881 15981217 ~ 16004719 (-) False strada
XM_007251104.3 mRNA downstream 306124 15952844 ~ 15964476 (-) True snrnp70
XM_022677496.1 mRNA downstream 328056 15936522 ~ 15942544 (-) True LOC103032263
XM_022677369.1 mRNA upstream 3528 16275677 ~ 16285893 (-) False dcaf7
XM_022677363.1 mRNA upstream 3528 16275677 ~ 16285893 (-) True dcaf7
XM_007251116.3 mRNA upstream 49429 16321578 ~ 16353831 (-) True LOC103036671
XM_022677247.1 mRNA upstream 133802 16405951 ~ 16408493 (-) True fzd2
XM_022677441.1 mRNA upstream 155955 16428104 ~ 16437125 (-) True ccdc43
XR_002650886.1 other downstream 368167 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 368167 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 368168 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 983865 15285845 ~ 15286735 (-) False LOC111188178
TU14606 other downstream 992163 15272755 ~ 15278437 (-) True G10808
XR_454920.3 other upstream 50884 16323033 ~ 16353834 (-) False LOC103036671
TU15837 other upstream 2836564 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2966757 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 3513832 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 3726291 19998440 ~ 20082442 (-) True G11917

Expression Profile