RNA id: TU14961


Basic Information

Item Value
RNA id TU14961
length 1348
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G11070
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16290960 ~ 16304539 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atccatttcCTATTTCGTTGTCACTCACGACTTcgtacacacactctttaattcGCTGCCAtacactttctcactcactgccacacacacattctttctcTCCGCCAACACAAGATacacattttctgtttctctctcaggaaAACTGGACCCGcacactttcacactcacaGGTACACTTTTAATCCCTTTAACAGACACTCGTACacccttttcttttcctctctgtcAGTCGCACTGTCGCACACACTTCTGTTTCACTCACTCTAAACAGGAAAAGACGAGAGGATAAAAACCAGACAGAAAAATTTAGAAGTGAGAAAAGAACGGAAGCGGTGCGGagcaaagccaaaaaaaaaaaatttagataGCAAAAAAATTTATAAGACACTTGTCTTTCGGCATCCCCGTTCATTTCCCCTtagaaaaatgtactttaacaAAGTTTCCCCTCTGGCCCGAAACCCCCCGCTCTCAACACACAGATGAGGGATCGATCCATTTTTCTTTACCAGCAGGTTCGCGACTCTATCGCTGTGCCTATGTGCTCACAGCCCCGTCAGACTGTGCCCTCCGTTTTCTCACAAAAAACCAGGGGAAAAAATCTTTAACCTTTAAATATCGTCATACAAAGGCGGGTTATCCGGCCCCAGGAACCAGTTTTTTCTGGGCTATGCCCCAAATCTTGGATTGAGGCAAACACacagcaccaaaaaaaaatttagataGCAAAAAAATTTATAAGACACTTGTCTTTCGGCATCCCCGTTCATTTCCCCTtagaaaaatgtactttaacaAAGTTTCCCCTCTGGCCCGAAACCCCCCGCTCTCAACACACAGATGAGGGATCGATCCATTTTTCTTTACCAGCAGGTTCGCGACTCTATCGCTGTGCCTATGTGCTCACAGCCCCGTCAGACTGTGCCCTCCGTTTTCTCACAAAGACAGTCAACGAGCCGGGATGCCAAAAAgagaaggtttttattttgaagttgcaaaaagcaaaaataaagcgAAAGCAATGGATGAAGAATGAGAGTAGTCAGGAAAGTCGGAAAAAGCCCCTTTCTGTGTCGACTGGGCATTTTTATACAGTCCCCCCCTGCATACATGAGGCAATCCCCTCGTGATCTGTTTTGGAACAGGTCACtaccaaatataaaaagaggaaCAGAAACTGCACGTGCACCAGATGATAagacgcactgacgattttgggggaaaatttgatttttagtgtgccttatatagcgaaaaatatggtacctcCACATGTGAAATtctgcattttttaatatattgtttagTCAATGTTTGTGTAAATTCTGTCTCCTCCCAACTCagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14952 lncRNA downstream 475 16287127 ~ 16290485 (-) True G11069
TU14947 lncRNA downstream 18811 16270600 ~ 16272149 (-) True G11065
TU14913 lncRNA downstream 66272 16169805 ~ 16224688 (-) True G11036
TU14914 lncRNA downstream 66272 16169805 ~ 16224688 (-) False G11036
TU14922 lncRNA downstream 145660 16145041 ~ 16145300 (-) True G11043
TU14962 lncRNA upstream 2549 16307088 ~ 16312001 (-) False G11071
TU14968 lncRNA upstream 2549 16307088 ~ 16311887 (-) False G11071
TU14963 lncRNA upstream 4373 16308912 ~ 16311887 (-) False G11071
TU14964 lncRNA upstream 4373 16308912 ~ 16310601 (-) False G11071
TU14966 lncRNA upstream 4373 16308912 ~ 16311887 (-) False G11071
XM_022677369.1 mRNA downstream 5067 16275677 ~ 16285893 (-) False dcaf7
XM_022677363.1 mRNA downstream 5067 16275677 ~ 16285893 (-) True dcaf7
XM_007251106.3 mRNA downstream 286241 15981217 ~ 16004719 (-) False strada
XM_007251116.3 mRNA upstream 17039 16321578 ~ 16353831 (-) True LOC103036671
XM_022677247.1 mRNA upstream 101412 16405951 ~ 16408493 (-) True fzd2
XM_022677441.1 mRNA upstream 123565 16428104 ~ 16437125 (-) True ccdc43
XM_007256387.3 mRNA upstream 388883 16693422 ~ 16763105 (-) True c1ql1
XM_022677672.1 mRNA upstream 761857 17066396 ~ 17068055 (-) False LOC111194193
XR_002650886.1 other downstream 388527 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 388527 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 388528 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 1004225 15285845 ~ 15286735 (-) False LOC111188178
TU14606 other downstream 1012523 15272755 ~ 15278437 (-) True G10808
XR_454920.3 other upstream 18494 16323033 ~ 16353834 (-) False LOC103036671
TU15837 other upstream 2804174 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2934367 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 3481442 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 3693901 19998440 ~ 20082442 (-) True G11917

Expression Profile