RNA id: TU15068


Basic Information

Item Value
RNA id TU15068
length 518
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G11150
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16817237 ~ 16817754 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGTGAAggagggacgaggagagcggatgcaaatgcgagagattttattaaacaataaacaaaagacaaaaataaacaaataaactgaaactaaactgaaaacaagaaacacgggacacagagacgcaaccataacaggctaacaaagcacaagaaccgacacgagggaaagggagcacggactataaatagtgtaacacacacacgggaaacagaaaacacctggggctaaggggcggagtaacaaatgaacacaggtgagaacaagaaacactgaggaacacggatcacgtgggagacacactcacagtcacaagcagagacaggcacagaaaaggtaaataaacacagaaacacgagaacagacagggaccacgtgacaagaaaggattgactgaagttcagttcacttatttactctatgtaacatttaagtcttgaaaccgagttgaagttacttaaatttatctgaaattaaatttactttaaaaaaaagcaaatgcagaaagttgcgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15053 lncRNA downstream 57216 16759416 ~ 16760021 (-) True G11137
TU15044 lncRNA downstream 129721 16686329 ~ 16687516 (-) True G11134
TU15034 lncRNA downstream 160619 16656399 ~ 16656618 (-) True G11125
TU15023 lncRNA downstream 199198 16605038 ~ 16618039 (-) True G11116
TU15015 lncRNA downstream 255874 16561124 ~ 16561363 (-) True G11108
TU15070 lncRNA upstream 15487 16833241 ~ 16840238 (-) True G11152
TU15072 lncRNA upstream 16488 16834242 ~ 16837863 (-) False G11153
TU15073 lncRNA upstream 19863 16837617 ~ 16838934 (-) True G11153
TU15071 lncRNA upstream 20978 16838732 ~ 16839958 (-) False G11153
TU15077 lncRNA upstream 24964 16842718 ~ 16843004 (-) True G11155
XM_007256387.3 mRNA downstream 54132 16693422 ~ 16763105 (-) True c1ql1
XM_022677441.1 mRNA downstream 380112 16428104 ~ 16437125 (-) True ccdc43
XM_022677247.1 mRNA downstream 408744 16405951 ~ 16408493 (-) True fzd2
XM_007251116.3 mRNA downstream 463406 16321578 ~ 16353831 (-) True LOC103036671
XM_022677369.1 mRNA downstream 531344 16275677 ~ 16285893 (-) False dcaf7
XM_022677672.1 mRNA upstream 248642 17066396 ~ 17068055 (-) False LOC111194193
XM_022677670.1 mRNA upstream 248642 17066396 ~ 17068050 (-) True LOC111194193
XM_015601224.2 mRNA upstream 419620 17237374 ~ 17512950 (-) True LOC103042512
XM_022677868.1 mRNA upstream 1277285 18095039 ~ 18096516 (-) True LOC111194274
XM_022677680.1 mRNA upstream 1408350 18226104 ~ 18229347 (-) True LOC111194212
XR_454920.3 other downstream 463403 16323033 ~ 16353834 (-) False LOC103036671
XR_002650886.1 other downstream 914804 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 914804 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 914805 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 1530502 15285845 ~ 15286735 (-) False LOC111188178
TU15837 other upstream 2290959 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2421152 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 2968227 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 3180686 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 4157328 20975082 ~ 20975154 (-) True trnak-cuu

Expression Profile