RNA id: TU15819


Basic Information

Item Value
RNA id TU15819
length 409
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G11703
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19666960 ~ 19669244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAGACaggcagaaagacagacagattgaaAGATAGGCAGGCAGATGGAAAGATAGACAGTTGGAATTACAGACAGgcagaaagacagacagattgaaAGATAGGCAGGCAGATGGAACGATAGACAGTTGGAATTACAGACAGGTGGAAAGATAGGCAGGCAGATGGAAAGATAGACAGTTGGAATTACAGACAGGTGGAAAGATAGACAGGCAGATGGAAAGATAGACAGCTGGAATTATAAACaggcagaaagacagacagattgaaAGATAGGCAGGCAGATGGAACGATAGACAGTTGGAATTACAGACAGGTGGAAAGATAGACAGGCAGATGGAAAGATAGACAGCTGGAATTATAGACaggcagaaagacagacagattgaaAGATAGGCAGGCAGATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15765 lncRNA upstream 130580 19535675 ~ 19536380 (+) True G11678
TU15767 lncRNA upstream 131433 19391303 ~ 19535527 (+) True G11679
TU15733 lncRNA upstream 306856 19359898 ~ 19360104 (+) True G11673
TU15724 lncRNA upstream 360393 19274881 ~ 19306567 (+) True G11668
TU15730 lncRNA upstream 392219 19274173 ~ 19274741 (+) False G11671
XR_002650594.1 lncRNA downstream 377583 20046827 ~ 20063468 (+) True LOC111193550
TU16039 lncRNA downstream 389292 20058536 ~ 20147053 (+) True G11856
TU16075 lncRNA downstream 777150 20446394 ~ 20488144 (+) True G11891
TU16224 lncRNA downstream 859803 20529047 ~ 20529437 (+) True G12023
TU16228 lncRNA downstream 893529 20562773 ~ 20619977 (+) True G12027
XM_022674722.1 mRNA upstream 131858 19517613 ~ 19535102 (+) True LOC103047344
XM_022674699.1 mRNA upstream 177706 19449562 ~ 19489254 (+) True LOC103046737
XM_022674705.1 mRNA upstream 177706 19449562 ~ 19489254 (+) False LOC103046737
XM_007260546.3 mRNA upstream 222129 19412808 ~ 19444831 (+) False LOC103043893
XM_007260550.3 mRNA downstream 11630 19680874 ~ 19753953 (+) True LOC103047658
XM_007260551.3 mRNA downstream 11630 19680874 ~ 19753953 (+) False LOC103047658
XM_022677886.1 mRNA downstream 87292 19756536 ~ 19762235 (+) True LOC103025032
XM_022674772.1 mRNA downstream 104494 19773738 ~ 19777715 (+) True thyn1
XM_007260555.3 mRNA downstream 157036 19826280 ~ 19939463 (+) True igsf9b
TU15744 other upstream 242896 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 2527181 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 3706582 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 3897717 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 1293805 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 1297044 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 1306960 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 1790606 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 2660475 22329719 ~ 22341513 (+) False spa17

Expression Profile