RNA id: TU16228


Basic Information

Item Value
RNA id TU16228
length 583
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G12027
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20562773 ~ 20619977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcgttttttctttcattttaaaatgtctagttgtggtctctagtatgaatgaatgacatgtgagccgtttttgtaaaaaaaaagtgctcaggtgtctctgtatagctcttttttaatggactgttttaggggtgtgtccaaaatgaccggattccagctttgctcatgaatattcatacatgcaaacagcatgcaaatatctctcctctgattggctaggagcactgcgacgcccctccaccgctctgccgctcactgcctcccacctcctaactgatgagcggtgatgttgtgtcgcttcagctccgcctctgggagtttctcgagccaaggtgggctggtctgtgagtttctgcctacgtaggcagaaagataattcaaaattcacccgtttttcggagggggggaggggggatttctttgcttagctcctgcagacaatgggggctgcaaaacagtttaatgtgcaggtgtacacattcaactcggagagacctactgtattccacaaaaaacaagaaaaatcggattttcgcggaaggtgacctttaagtaacttcaactcggtttcaagacttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16224 lncRNA upstream 33336 20529047 ~ 20529437 (+) True G12023
TU16075 lncRNA upstream 74629 20446394 ~ 20488144 (+) True G11891
TU16039 lncRNA upstream 415720 20058536 ~ 20147053 (+) True G11856
XR_002650594.1 lncRNA upstream 499305 20046827 ~ 20063468 (+) True LOC111193550
TU15819 lncRNA upstream 893529 19666960 ~ 19669244 (+) True G11703
TU16235 lncRNA downstream 51057 20671034 ~ 20710678 (+) True G12034
TU16239 lncRNA downstream 107566 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA downstream 108666 20728643 ~ 20755280 (+) True G12039
TU16389 lncRNA downstream 371893 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 436776 21056753 ~ 21162746 (+) True LOC103030577
XM_022674824.1 mRNA upstream 547351 19952453 ~ 20015422 (+) True LOC103025662
XM_022674831.1 mRNA upstream 547351 19970305 ~ 20015422 (+) False LOC103025662
XM_022674825.1 mRNA upstream 547351 19981049 ~ 20015422 (+) False LOC103025662
XM_022674791.1 mRNA upstream 628555 19826280 ~ 19934218 (+) False igsf9b
XM_007231435.3 mRNA downstream 126052 20746029 ~ 20844121 (+) True LOC103032372
XM_022674870.1 mRNA downstream 232205 20852182 ~ 20900847 (+) False tmprss5
XM_015600778.2 mRNA downstream 252339 20872316 ~ 20874119 (+) True LOC103032051
XM_022674888.1 mRNA downstream 256932 20876909 ~ 20879031 (+) True LOC111193556
XM_022674881.1 mRNA downstream 264571 20884548 ~ 20886467 (+) True LOC111193555
TU15744 other upstream 1138709 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3422994 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4602395 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 4793530 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 343072 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 346311 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 356227 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 839873 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1709742 22329719 ~ 22341513 (+) False spa17

Expression Profile