RNA id: TU16239



Basic Information


Item Value
RNA id TU16239
length 1121
lncRNA type read_through
GC content 0.36
exon number 3
gene id G12038
representative True

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20727543 ~ 20767399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aagcgagcatgtgtaaagcattttaatgtaaaattgcttaattttgctgaattaaatacaagtaacaaagtaaacgagtaacaaaaatatgaacaccacacaagggttaagaaacttaatttttaagtggtatatcTATTATAATGGAGTATAATTCTGATAAAAAGTGAGGGATTTTCCTGGCGTTCAGAAGCTGCTCTGTACTGAAACACGGTTACATAGTGGTACTTGTTTCTGATATTTTTAGAATGTGTAAAGTTTAGAGTAGTGGCTAAAGGCCAAGTCTCTGAGCGGACTCCTTCCTTTTAGTGTGGTGATCTTAAAGCCTCGTCTGTTGTGTGCCAGAGCTTTCACTGACTCTCAGCTTTCTGAAGGTAGAATTTACAACATCCACACTCAGAGCCGTGTCTTTTATTCAATATAACACCCAATAGAAAAAGTAGAGTGAATAGAAGTCTATTAATACTGGGGTGTACGCTGGATTTACATAAAGAGCATGACTGAATACTGAATGTGTAGATAAATATAACAGCTTTATGAGTAAGTATGTTCATTTGAGGTAATTCTCTGGTTGTCACGGAAATgggggtgacccaggcagggtgacgaggaaagcggacacaagtgcaggtaagggcgaaataaataaataatttattaaataaataacaaagaaacaaggaaacgaggaacaagtaaacatgaaacaaagaaacacaaataaccaataacaaacgagcgatgataataataaacaaacagggaatatatatatatatatataagggaaataaactagaaaataaataaggaaataaactataaacgtgaaaacaagaaataaacgagaaacaaatgACTAAGGTTATATACAGGGAACAtagagctaaacaagaaactaaactagacaaggagaactaaactaagcagggcaaaggagaaaacaatggaaataaacaggaaaccaGAAATATACACGAgataaacagaggtaaacacagagcaaggacttGGGCTATGAAACGCGGtgaaacaacagagagacaaaacaacaggggaaggtgcaaagaccgacggagacaaagtggcagaggagggctatttaaagaaacaggaaacac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16235 lncRNA upstream 16865 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 107566 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 198106 20529047 ~ 20529437 (+) True G12023
TU16075 lncRNA upstream 239399 20446394 ~ 20488144 (+) True G11891
TU16039 lncRNA upstream 580490 20058536 ~ 20147053 (+) True G11856
TU16389 lncRNA downstream 224471 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 289354 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 289465 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 346456 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 403706 21171105 ~ 21171318 (+) True G12242
XM_022674824.1 mRNA upstream 712121 19952453 ~ 20015422 (+) True LOC103025662
XM_022674831.1 mRNA upstream 712121 19970305 ~ 20015422 (+) False LOC103025662
XM_022674825.1 mRNA upstream 712121 19981049 ~ 20015422 (+) False LOC103025662
XM_022674791.1 mRNA upstream 793325 19826280 ~ 19934218 (+) False igsf9b
XM_022674870.1 mRNA downstream 84783 20852182 ~ 20900847 (+) False tmprss5
XM_015600778.2 mRNA downstream 104917 20872316 ~ 20874119 (+) True LOC103032051
XM_022674888.1 mRNA downstream 109510 20876909 ~ 20879031 (+) True LOC111193556
XM_022674881.1 mRNA downstream 117149 20884548 ~ 20886467 (+) True LOC111193555
XM_022674875.1 mRNA downstream 120090 20887489 ~ 20900847 (+) False tmprss5
TU15744 other upstream 1303479 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3587764 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4767165 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 4958300 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 195650 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 198889 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 208805 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 692451 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1562320 22329719 ~ 22341513 (+) False spa17

Expression Profile