RNA id: TU16240


Basic Information

Item Value
RNA id TU16240
length 201
lncRNA type read_through
GC content 0.36
exon number 3
gene id G12039
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20728643 ~ 20755280 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcacagttttcatgcatcttggcatcatgttctcctccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaaaataagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcatcatttttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16235 lncRNA upstream 17965 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 108666 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 199206 20529047 ~ 20529437 (+) True G12023
TU16075 lncRNA upstream 240499 20446394 ~ 20488144 (+) True G11891
TU16039 lncRNA upstream 581590 20058536 ~ 20147053 (+) True G11856
TU16389 lncRNA downstream 236590 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 301473 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 301584 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 358575 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 415825 21171105 ~ 21171318 (+) True G12242
XM_022674824.1 mRNA upstream 713221 19952453 ~ 20015422 (+) True LOC103025662
XM_022674831.1 mRNA upstream 713221 19970305 ~ 20015422 (+) False LOC103025662
XM_022674825.1 mRNA upstream 713221 19981049 ~ 20015422 (+) False LOC103025662
XM_022674791.1 mRNA upstream 794425 19826280 ~ 19934218 (+) False igsf9b
XM_022674870.1 mRNA downstream 96902 20852182 ~ 20900847 (+) False tmprss5
XM_015600778.2 mRNA downstream 117036 20872316 ~ 20874119 (+) True LOC103032051
XM_022674888.1 mRNA downstream 121629 20876909 ~ 20879031 (+) True LOC111193556
XM_022674881.1 mRNA downstream 129268 20884548 ~ 20886467 (+) True LOC111193555
XM_022674875.1 mRNA downstream 132209 20887489 ~ 20900847 (+) False tmprss5
TU15744 other upstream 1304579 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3588864 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4768265 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 4959400 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 207769 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 211008 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 220924 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 704570 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1574439 22329719 ~ 22341513 (+) False spa17

Expression Profile